PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

TALE

Protein Properties

Length: 738aa MW: 79622.7 Da PI: 7.6347

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011085539.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.3	2.9e-09	526	563	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe n+yps +++ LA+++gL+ +qV++WF N R + XP_011085539.1 526 FEHflNPYPSDADKLLLARQTGLSRNQVSNWFINARVR 563 665569******************************88 PP
2	BELL	124	5.8e-40	386	457	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 er e+q++k+kLls+l+eVd+rY++y++q+q+v++sF++v+glg+a pYt lA+ka+SrhFrcLkdaia+q+ XP_011085539.1 386 ERLEHQRRKVKLLSMLDEVDRRYNHYCDQMQMVVNSFDMVMGLGAAVPYTCLAQKAMSRHFRCLKDAIASQL 457 6889******************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	4.6E-77	311	455	IPR006563	POX domain
Pfam	PF07526	8.4E-52	316	454	IPR006563	POX domain
PROSITE profile	PS50071	12.811	504	567	IPR001356	Homeobox domain
CDD	cd00086	1.10E-12	507	568	No hit	No description
SMART	SM00389	4.8E-10	507	571	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.67E-17	509	574	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.4E-28	510	573	IPR009057	Homeodomain-like
Pfam	PF05920	7.3E-18	524	563	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 738 aa Download sequence Send to blast
MGIATPPFHS LTSHSSKDHN SLQFLDNSNS MSQDFHQGIF SFSNGLQEQQ QQQHLTQQIP 60 RDKLRVFQGF NPPPPLVGVE EEETGGLPVY ETASMLSEMF NLPTGGAASA TELLENQISQ 120 SYRNPRAAQL LSSADWFSHG QGLVVGGGLG GSKNQIVVSN STAPPHHHHH NQISRINGDS 180 MQLFLMNPQQ QRSPSPSPPP PSSTLHMLLP HPSSSSSSTL QAFQTASGQF TWVSNTGDVN 240 NPNEIPGVVE GQGLSLSLSS SLQRLEAVAK PEELRIGEGG LMFFGPGGGG GGALHLQGGL 300 SQNHVGLGSS FDGVNMLRNS KYAKAAQELL EEFCSVGRGQ FKRSKFGNSN RNPNSNPSGG 360 GGATSGGSGG GNTSSSKDLP PLSSSERLEH QRRKVKLLSM LDEVDRRYNH YCDQMQMVVN 420 SFDMVMGLGA AVPYTCLAQK AMSRHFRCLK DAIASQLKHS CEVLGEKDAA AASGLTKGET 480 PRLRILEQSL RQQRAFNQMG MMEQEAWRPQ RGLPERSVNI LRAWLFEHFL NPYPSDADKL 540 LLARQTGLSR NQVSNWFINA RVRLWKPMVE EMYQQEAKED TEQRERDQSS TSTGPAHNAQ 600 TPTPPHPSTT TTTTTTTGAA AFTPPPGGRS EINAHESDPS FVAINAHCFS ENQAKLQHVA 660 KNNDSLPAGA TPLAAASSTT AQPASRAALN AGIESRVMRF GTGAGDVSLT LGLRHAGNPT 720 EKGSFTVRDH FGGLPLRF

Sequence ? help Back to Top

Protein Sequence Length: 738 aa Download sequence Send to blast

MGIATPPFHS LTSHSSKDHN SLQFLDNSNS MSQDFHQGIF SFSNGLQEQQ QQQHLTQQIP  60
RDKLRVFQGF NPPPPLVGVE EEETGGLPVY ETASMLSEMF NLPTGGAASA TELLENQISQ  120
SYRNPRAAQL LSSADWFSHG QGLVVGGGLG GSKNQIVVSN STAPPHHHHH NQISRINGDS  180
MQLFLMNPQQ QRSPSPSPPP PSSTLHMLLP HPSSSSSSTL QAFQTASGQF TWVSNTGDVN  240
NPNEIPGVVE GQGLSLSLSS SLQRLEAVAK PEELRIGEGG LMFFGPGGGG GGALHLQGGL  300
SQNHVGLGSS FDGVNMLRNS KYAKAAQELL EEFCSVGRGQ FKRSKFGNSN RNPNSNPSGG  360
GGATSGGSGG GNTSSSKDLP PLSSSERLEH QRRKVKLLSM LDEVDRRYNH YCDQMQMVVN  420
SFDMVMGLGA AVPYTCLAQK AMSRHFRCLK DAIASQLKHS CEVLGEKDAA AASGLTKGET  480
PRLRILEQSL RQQRAFNQMG MMEQEAWRPQ RGLPERSVNI LRAWLFEHFL NPYPSDADKL  540
LLARQTGLSR NQVSNWFINA RVRLWKPMVE EMYQQEAKED TEQRERDQSS TSTGPAHNAQ  600
TPTPPHPSTT TTTTTTTGAA AFTPPPGGRS EINAHESDPS FVAINAHCFS ENQAKLQHVA  660
KNNDSLPAGA TPLAAASSTT AQPASRAALN AGIESRVMRF GTGAGDVSLT LGLRHAGNPT  720
EKGSFTVRDH FGGLPLRF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	2e-15	513	570	1	58	Homeobox protein Meis1
4xrs_B	2e-15	513	570	1	58	Homeobox protein Meis1
5bng_A	3e-15	513	571	1	59	Homeobox protein Meis2
5bng_B	3e-15	513	571	1	59	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011085539.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085540.1	0.0	BEL1-like homeodomain protein 4
Swissprot	Q9SW80	1e-164	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A2G9HVH1	0.0	A0A2G9HVH1_9LAMI; Transcription factor MEIS1
STRING	Migut.H00514.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3341	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	1e-132	BEL1-like homeodomain 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]