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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011085450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | GRAS | ||||||||
Protein Properties | Length: 442aa MW: 48309 Da PI: 5.7844 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 365.2 | 9.3e-112 | 82 | 439 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 lLl+cAe+v+ ++l a +lL ++ el+sp g++ qR+ ayf+ AL++r+ +s ++y+ l+p +++ +++++l+a+++++ v P++kfsh+t XP_011085450.1 82 GLLLQCAECVAIDNLDDAGRLLPEIAELSSPFGSSAQRVGAYFADALSSRIISSYLGTYSPLSPFSKT--HVQKRLSAVQIYNSVAPLIKFSHFT 174 58*********************************************************988777666..6************************ PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192 aNqaI +av+g+++vH+iD+di+qGlQWp L++ Las++++ s+RiTg+gs s+e l++tg+rLa+fA++l +pf+f++l k +++ XP_011085450.1 175 ANQAIQQAVDGADHVHVIDLDIMQGLQWPGLFHILASKTRKIKSFRITGLGS----SAELLSSTGQRLAEFASALSIPFQFHPLEGKIGYIKDIN 265 ****************************************************....9**************************8666666669** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 eL++k gE+++V++++ h l+d ++s L+++ ++Pk++++v q+++h ++sFl rf+eal+yysalfd+l ++l++eseer++vE+ XP_011085450.1 266 ELNIKLGEVVVVHWMH--HCLYDVTGSDLG----ALRILSLIRPKLITIVAQDLSH-GGSFLGRFVEALHYYSALFDALGEGLAAESEERHTVEQ 353 ***************9..888888888888....9*********************.789*********************************** PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +l+g ei+n+va g +r+ + + +ekW + l ++GF+pv+l + a+qa lll +++++gy++ ee+g+l lgWkd +L+++SaW+ XP_011085450.1 354 QLFGSEIRNIVAVGGPKRTGEVK-VEKWGDELFKVGFRPVSLAGNPAAQATLLLGMFPWQGYTLVEENGCLKLGWKDLSLLTASAWQ 439 *****************998887.9*************************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 53.623 | 54 | 419 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.2E-109 | 82 | 439 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MIMLHSLLTP LHHHPANNSS MSAAGKRAVD LSSTSDEEPI KRRRSHLSLE EDLQAEEEEE 60 VEQLHPAACE DDGDSTGLRL LGLLLQCAEC VAIDNLDDAG RLLPEIAELS SPFGSSAQRV 120 GAYFADALSS RIISSYLGTY SPLSPFSKTH VQKRLSAVQI YNSVAPLIKF SHFTANQAIQ 180 QAVDGADHVH VIDLDIMQGL QWPGLFHILA SKTRKIKSFR ITGLGSSAEL LSSTGQRLAE 240 FASALSIPFQ FHPLEGKIGY IKDINELNIK LGEVVVVHWM HHCLYDVTGS DLGALRILSL 300 IRPKLITIVA QDLSHGGSFL GRFVEALHYY SALFDALGEG LAAESEERHT VEQQLFGSEI 360 RNIVAVGGPK RTGEVKVEKW GDELFKVGFR PVSLAGNPAA QATLLLGMFP WQGYTLVEEN 420 GCLKLGWKDL SLLTASAWQP SD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-159 | 74 | 440 | 13 | 380 | Protein SCARECROW |
5b3h_A | 1e-159 | 74 | 440 | 12 | 379 | Protein SCARECROW |
5b3h_D | 1e-159 | 74 | 440 | 12 | 379 | Protein SCARECROW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 40 | 45 | KRRRSH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011085450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011085450.1 | 0.0 | scarecrow-like protein 23 | ||||
Swissprot | Q9FHZ1 | 1e-173 | SCL23_ARATH; Scarecrow-like protein 23 | ||||
TrEMBL | A0A2Z7A720 | 0.0 | A0A2Z7A720_9LAMI; Uncharacterized protein | ||||
STRING | XP_006481359.1 | 0.0 | (Citrus sinensis) | ||||
STRING | EOX93173 | 0.0 | (Theobroma cacao) | ||||
STRING | XP_006429765.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10745 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41920.1 | 1e-163 | GRAS family protein |
Publications ? help Back to Top | |||
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