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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011085424.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | CO-like | ||||||||
Protein Properties | Length: 410aa MW: 44535.6 Da PI: 4.8394 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.3 | 1.1e-06 | 5 | 44 | 6 | 39 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ ++e++ + +C+++ lC +C + H+ H++ XP_011085424.1 5 CDFCGEQRSIVYCRSDAASLCLSCDRNVHSAnalsrrHSR 44 *****************************65677777765 PP | |||||||
2 | zf-B_box | 22 | 3.4e-07 | 46 | 87 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C++++++++ C + + lC++C +H g H++ XP_011085424.1 46 LVCERCNSQPAFVRCIEERISLCPNCDWVGHAGsnvspaHKR 87 68*****************************88778888876 PP | |||||||
3 | CCT | 63.3 | 7.4e-22 | 353 | 396 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a++RYkeK+ktRkFeKk+rY+sRKa+A+ R RvKGrFvk+ XP_011085424.1 353 RSDAVMRYKEKKKTRKFEKKVRYASRKARADVRRRVKGRFVKAG 396 889**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.655 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.83E-6 | 4 | 47 | No hit | No description |
SMART | SM00336 | 2.3E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.517 | 43 | 84 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.001 | 47 | 83 | No hit | No description |
Pfam | PF06203 | 1.9E-16 | 353 | 395 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.368 | 353 | 395 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MGYLCDFCGE QRSIVYCRSD AASLCLSCDR NVHSANALSR RHSRTLVCER CNSQPAFVRC 60 IEERISLCPN CDWVGHAGSN VSPAHKRQAV NCYSGCPSAA ELSAIWSFLL DLPSVGDSTC 120 EQGMGSMSIS DNKPRDCQGS QGKNNTQDAS FLVEDSDLNN MDVNKATVCI ESCTSLDPKL 180 QNADQLAGSS NSVMPKVFLP GEKGPVECED DGFYDEFNMD EVDLSIENYE ELFGVAHNPE 240 DLFDNDGIDG LFGLKDMSGS DCHGAYPEGS SVGGMKMQPA CSNAASADSV VSCKTEPNLC 300 FTRQAHSSLS FSGLNGETSA ADYQDCGVSS IVIMGEPPWG PPGPESSIPP SSRSDAVMRY 360 KEKKKTRKFE KKVRYASRKA RADVRRRVKG RFVKAGDAYD YDPLSQSRSC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011085424.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011085424.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_020551824.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_020551825.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9SSE5 | 1e-137 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A2G9HSC7 | 0.0 | A0A2G9HSC7_9LAMI; Uncharacterized protein | ||||
STRING | Migut.M00064.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1270 | 24 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-109 | CONSTANS-like 9 |