PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011085374.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 406aa MW: 43142.2 Da PI: 6.1453

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011085374.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.6	1.3e-14	129	176	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + hn +Er RR+++++++ +L+el+P++ K +Ka++L A++YIk Lq XP_011085374.1 129 QVHNLNERLRRQKLKEKMKTLQELIPNC-----NKRDKASTLDDAIKYIKTLQ 176 57***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.17E-14	120	176	No hit	No description
PROSITE profile	PS50888	17.085	126	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-18	128	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.3E-12	129	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-17	130	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.7E-14	132	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MRDADEDRPP VAAAGNKKSY EYDENRGTGS NMNYGGIPLS CDQQSLWVQD EDEQPPSCEV 60 PPPPAVVHGV VAVEKIKGEA GSSKTHHASD SRHHYLQTTD IEGHEDGGTE EDSKTGSECR 120 QQKRARSTQV HNLNERLRRQ KLKEKMKTLQ ELIPNCNKRD KASTLDDAIK YIKTLQYHVQ 180 MMSMGAGFSM LRSPTMTPQP EHQGLQVPSF PPILHAVPGG PGAGQGLQVP SFPPILHAVP 240 GEPGAGIGCG LGMGISGLSS SAGFAMRQLA LSSPSSLPGI SEAAHNPVNI LGSSPFVCSS 300 MDLRPMYAAV FTPGSQCTAT ALDGSSPSSQ CAMSSKSESC HVPVTGEVGS PSSCSLEGQF 360 KEGGARARVL PSQVIRPCFI EDDRSTSHDG SSEWASSETA KLGDCF

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MRDADEDRPP VAAAGNKKSY EYDENRGTGS NMNYGGIPLS CDQQSLWVQD EDEQPPSCEV  60
PPPPAVVHGV VAVEKIKGEA GSSKTHHASD SRHHYLQTTD IEGHEDGGTE EDSKTGSECR  120
QQKRARSTQV HNLNERLRRQ KLKEKMKTLQ ELIPNCNKRD KASTLDDAIK YIKTLQYHVQ  180
MMSMGAGFSM LRSPTMTPQP EHQGLQVPSF PPILHAVPGG PGAGQGLQVP SFPPILHAVP  240
GEPGAGIGCG LGMGISGLSS SAGFAMRQLA LSSPSSLPGI SEAAHNPVNI LGSSPFVCSS  300
MDLRPMYAAV FTPGSQCTAT ALDGSSPSSQ CAMSSKSESC HVPVTGEVGS PSSCSLEGQF  360
KEGGARARVL PSQVIRPCFI EDDRSTSHDG SSEWASSETA KLGDCF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011085374.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085374.1	0.0	transcription factor APG-like isoform X2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46970.1	5e-25	phytochrome interacting factor 3-like 1