PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085275.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family WRKY
Protein Properties Length: 311aa    MW: 34652.1 Da    PI: 6.4489
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085275.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.5e-31171227259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s++p sYYrCt+++Cpvkk+vers +dp+vv++tYeg+Hnh+
  XP_011085275.1 171 EDGYRWRKYGQKAVKNSPYP-SYYRCTTQKCPVKKRVERSFQDPSVVITTYEGQHNHH 227
                     8*******************.9***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.2E-33155229IPR003657WRKY domain
SuperFamilySSF1182901.96E-26162229IPR003657WRKY domain
PROSITE profilePS5081129.287165229IPR003657WRKY domain
SMARTSM007743.1E-35170228IPR003657WRKY domain
PfamPF031061.9E-23171227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MSEEFREFYY HQPFHDDQRR VSGGATNFLY SATANSSADD SSSLHPQYLQ MFDPSYLSFT  60
EFLHGSAHHN SLSTTFGSTS EAVSALKEED KPVVGGGETP ATPNSSISSA STEAAAGDQE  120
DSNKGKKESQ VKETAEDGED TSKGKAKKKG EKKERQPRFA FMTKSEVDHL EDGYRWRKYG  180
QKAVKNSPYP SYYRCTTQKC PVKKRVERSF QDPSVVITTY EGQHNHHVPA TLRGNVAGMF  240
ASSMLSPAPP LTLDGHSFPQ ELLVQMPHLY SYVDGGSTSN LYHQQQQFQQ FPVDYGLLQD  300
IIPPGFPKQE P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-27160230778Probable WRKY transcription factor 4
2lex_A4e-27160230778Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085275.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085274.10.0probable WRKY transcription factor 71
TrEMBLA0A2G9I1H71e-133A0A2G9I1H7_9LAMI; Uncharacterized protein
STRINGXP_009616483.11e-100(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.14e-53WRKY DNA-binding protein 71