PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085226.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARF
Protein Properties Length: 910aa    MW: 100484 Da    PI: 6.7136
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085226.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.4e-24128229199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d+++++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_011085226.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHNNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 218
                     99*****************************8544444..48************************************************..888 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_011085226.1 219 KNQLLLGIRRA 229
                     9999***9986 PP
2Auxin_resp116.52.3e-38254337183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaast+s F+++YnPras+seFv++++k+++a++ ++vs+GmRf+m fete+ss rr++Gt++g+ dldp rWpnS+Wrs+k
  XP_011085226.1 254 AAHAASTNSRFTIFYNPRASPSEFVISLAKFVRAVYhTRVSIGMRFRMLFETEESSVRRYMGTITGICDLDPARWPNSHWRSVK 337
                     79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-48113257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-42121243IPR015300DNA-binding pseudobarrel domain
CDDcd100171.53E-21127228No hitNo description
PfamPF023623.0E-22128229IPR003340B3 DNA binding domain
SMARTSM010191.2E-23128230IPR003340B3 DNA binding domain
PROSITE profilePS5086312.478128230IPR003340B3 DNA binding domain
PfamPF065072.9E-33254337IPR010525Auxin response factor
PfamPF023092.7E-8766861IPR033389AUX/IAA domain
SuperFamilySSF542776.54E-8767850No hitNo description
PROSITE profilePS5174524.737775859IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 910 aa     Download sequence    Send to blast
MKLSAGMDQQ SPEAGEKSCL NSELWHACAG PLVSLPAIGS HVVYFPQGHS EQVAASTNKE  60
VDGQIPNYPS VSPQLICQLH NVTMHADIET DEVYAQMTLQ PLSPQEQKEV FFLPADLGAP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHNNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAA RPQTVMPSSV  240
LSSDSMHLGL LAAAAHAAST NSRFTIFYNP RASPSEFVIS LAKFVRAVYH TRVSIGMRFR  300
MLFETEESSV RRYMGTITGI CDLDPARWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPIYPSPF SLRLKRPWPP GLPSFSGMKN DEMGLNSPFM WLRGGVEDLG TQSLNFQGMG  420
MTPWMQPRLD NSVLGMQNDV YQAIAAAALH EMRVAQPPKQ ILSSMMQFQQ PQALGSMPAG  480
FIQPQVLQSS QSPAPLLQSL SGNQSQAPSQ LHPNFLQQKV HHQNSFNNIQ LPQQQHQQQQ  540
STLLHQQHHV TDHPLQASTV APILSRLSTN SQEQSESLQP ISSMHQNFSE PILKPMAANT  600
SAPLHGLLGP AHQDEASKLL SMPRSSNLLS SSGWPTKRVA LDPLLSDCVS QGNSTQLNHL  660
GSSNTNVTQN AVSLPPFPGR ECLIEQEGSN DPQNHFLFGV NIDSSSLLMQ NGMSNLKGVG  720
SDCDNAAIAF GSSSYMSSPV ADYSLKTTVT SSNGIDESGF LRSSENVGHE NPSNRTFVKV  780
YKSGSFGRSL DITKFSSYHE LRSELAQMFG LEGQLEDPLR SGWQLVFVDR ENDVLLLGDD  840
PWQEFVNSVW CIKILSPQEV QEMGKQRLEI LTSVPVQRPP LPNGTSDGYV SRQEARNINA  900
GIPSVGTLDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1571635847388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085226.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085226.10.0auxin response factor 6-like isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2G9HYM10.0A0A2G9HYM1_9LAMI; Auxin response factor
STRINGEOY275850.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]