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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011085207.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 847aa MW: 93117.6 Da PI: 6.5904 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.3 | 1.2e-18 | 20 | 78 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ XP_011085207.1 20 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78 6789*****************************************************97 PP | |||||||
2 | START | 169.4 | 2.3e-53 | 168 | 375 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e++ ka+ ++ +Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ ++ i +g g+++l+ XP_011085207.1 168 IAEETLAEFLGKATGTAVNWVQMIGMKPGPDSIGIIAVSRNSSGVAARACGLVSLEPM-KVAEILKDRPSWYRDCRCLDVASIIPTGngGTIELI 261 68999***********************************9*****************.8888888888*****************999****** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s + p+ + +vRae+lpSg+li+p+++g+s +++v+h+dl++++++++lr+l+ XP_011085207.1 262 YMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPNgppAACFVRAEMLPSGYLIRPCEGGGSIIHIVDHIDLDAWSVPEVLRPLY 356 *****************************************9999999999******************************************** PP HHHHHHHHHHHHHHTXXXX CS START 186 ksglaegaktwvatlqrqc 204 +s+ + ++k+++a+l++ + XP_011085207.1 357 ESSKILAQKMTMAALRHIR 375 ***************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.613 | 15 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-15 | 17 | 83 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.31E-16 | 20 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.14E-16 | 20 | 80 | No hit | No description |
Pfam | PF00046 | 3.2E-16 | 20 | 78 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 22 | 78 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 3.92E-6 | 72 | 111 | No hit | No description |
PROSITE profile | PS50848 | 25.951 | 158 | 386 | IPR002913 | START domain |
CDD | cd08875 | 6.22E-70 | 162 | 378 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 6.1E-21 | 166 | 372 | IPR023393 | START-like domain |
SMART | SM00234 | 1.5E-50 | 167 | 377 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.47E-36 | 168 | 379 | No hit | No description |
Pfam | PF01852 | 7.8E-51 | 168 | 375 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.92E-5 | 415 | 495 | No hit | No description |
SuperFamily | SSF55961 | 1.92E-5 | 528 | 602 | No hit | No description |
Pfam | PF08670 | 1.2E-49 | 702 | 846 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 847 aa Download sequence Send to blast |
MALCMHRESN SKQQQMDASK YVRYTPEQVE ALERVYAECP KPSSLRRQQL IRECPILSNI 60 EPKQIKVWFQ NRRCREKQRK EASRLQTVNR KLSAMNKLLM EENDRLQKQV SHLVYDNGCM 120 RQQLHTVSTT TTDTSCESVV VSGQKQQLNP TLQRPQRDAN SPAGLLAIAE ETLAEFLGKA 180 TGTAVNWVQM IGMKPGPDSI GIIAVSRNSS GVAARACGLV SLEPMKVAEI LKDRPSWYRD 240 CRCLDVASII PTGNGGTIEL IYMQTYAPTT LAAARDFWTL RYTTSLEDGS LVICERSLTS 300 STGGPNGPPA ACFVRAEMLP SGYLIRPCEG GGSIIHIVDH IDLDAWSVPE VLRPLYESSK 360 ILAQKMTMAA LRHIRQIAQE TNGEIQCTGG REPAVLRTLS QRLCRGFNDA VNGFTDDGWS 420 IMGSDGGEDV TIAINLSPSK FLGSQFNTLC MLPTFGGVLC ARASMLLQNV PPALLVRFLR 480 EHRSEWADYG VDVYSAASLK ASPYAVPCAK PGAIPSSHVT LPLAQTVEHE EFLEVVRLEG 540 HAFSPEDIAL SRDMYLLQLC SGVDETNTGA CAQLVFAPID ESFGDDAHML PSGFRVIPLD 600 PKSDEPAATR TLDLASALEV RHSGGRPPGE VDTSNQNLRS VLTIAFQFTF ENHYQDSVAA 660 MARQYVRSIV ASVQRVAMAI APSRLSSHMV PKPLPGSPEA VTLARWICRS YRAHTGGELL 720 RADSQGGDAV LKQLWHHADA IMCCSIKTNA SAVFTFANQA GLDMMETTLV ALQDIMLEKI 780 LDEAGRKILL SEFSKIMQQG FAYLPAGVCV SSMGRPVSYE QAVAWKVLND EDSNHCLAFM 840 FMNWSFV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011085207.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011085207.1 | 0.0 | homeobox-leucine zipper protein ATHB-14 | ||||
Swissprot | Q6AST1 | 0.0 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | A0A4D9B1U8 | 0.0 | A0A4D9B1U8_SALSN; Homeobox-leucine zipper protein | ||||
STRING | XP_009612341.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA457 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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