PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

GRAS

Protein Properties

Length: 743aa MW: 83587.8 Da PI: 6.2234

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011085025.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	383.9	1.9e-117	371	740	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++lL+ cA+av+++d + a+++L++++++a+p+gd mqRla+yf+ +L+ar+a+s++++y +l +ts ++ l+a++++ ++P+ k+s++ XP_011085025.1 371 RTLLTLCAQAVAADDRRTANEFLKQIRQHATPTGDGMQRLAHYFADGLEARMAGSGTQIYTSLINMPTS---AADILKAYHIYLATCPFRKISNF 462 789**********************************************************999988...8****************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 N++I++ +e+ +++HiiDf+i +G+QWp++lq L+sRp+gpp+lR+Tg++ p +g +e++eetg+rLa++Ae+++vpfefn+ +a+++e++ XP_011085025.1 463 FSNKTIMNVAEKVTKLHIIDFGILYGFQWPCFLQRLSSRPGGPPKLRVTGIDLPCPGfrPSERVEETGRRLASYAETFKVPFEFNA-IAQKWETI 556 **************************************************99999***********************.7*** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 +le+L++k++E l+Vn+ ++ +llde+v ++s+r+ vL+l+++++P v+v+ + +n++ F +rf eal +ys++fd+l+a++pre +er+ XP_011085025.1 557 KLEDLKIKEDELLVVNCLYRFRNLLDETVIVNSPRNIVLNLIRKMNPAVFVLGVVNGAYNAPFFITRFREALFHYSSFFDMLDANIPREIHERML 651 ******************************************************************************************* PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +E+ ++gre++nv+ace aer+er et+++W+ r ++aGF+++pl+++++ a+ ++ +++d + ++e+ ++l++gWk+r ++++S+W+ XP_011085025.1 652 LEKTVFGREAMNVIACEAAERIERPETYKQWQVRNMRAGFEQLPLDKEIMRIARDRVKSYHKD-FVIDEDGHWLLQGWKGRIVYALSSWT 740 *********************************************************77.***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.103	344	721	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.6E-115	371	740	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 743 aa Download sequence Send to blast
MIMDQNYRDL CGPTSGIILN KQAIPLFPGP NLINNVRVSN KFLTGSHADV VPVSSHLNFD 60 AQVQSAEGDA PEDLDFSDVV LKYINHILME EDVEEKACMF QESAALQAAE RSFYEVIGEK 120 YPASADYQHV PKLDHSFENP DEKIFVVSND CCGSGDMETL CPDWNSDHNW NRFYGHCDTV 180 DVVSTSQSSY SSSSSSGTIK EGPIDSPVST LRIPDIFTDG QSAIQFKKGV EEASKFLPNG 240 SNLIVDLGYD ELSVKEQKEG SASLIVKVEK KTANEEFVDG SRGKKNPYQE SMSLHDERSN 300 KQSAVYTEST VSPDMFDKVL LCSGGKNESD LRKALNEVTK STPLNDQSKG SNGGKSGAKK 360 KGGKRNVVDM RTLLTLCAQA VAADDRRTAN EFLKQIRQHA TPTGDGMQRL AHYFADGLEA 420 RMAGSGTQIY TSLINMPTSA ADILKAYHIY LATCPFRKIS NFFSNKTIMN VAEKVTKLHI 480 IDFGILYGFQ WPCFLQRLSS RPGGPPKLRV TGIDLPCPGF RPSERVEETG RRLASYAETF 540 KVPFEFNAIA QKWETIKLED LKIKEDELLV VNCLYRFRNL LDETVIVNSP RNIVLNLIRK 600 MNPAVFVLGV VNGAYNAPFF ITRFREALFH YSSFFDMLDA NIPREIHERM LLEKTVFGRE 660 AMNVIACEAA ERIERPETYK QWQVRNMRAG FEQLPLDKEI MRIARDRVKS YHKDFVIDED 720 GHWLLQGWKG RIVYALSSWT PVY

Sequence ? help Back to Top

Protein Sequence Length: 743 aa Download sequence Send to blast

MIMDQNYRDL CGPTSGIILN KQAIPLFPGP NLINNVRVSN KFLTGSHADV VPVSSHLNFD  60
AQVQSAEGDA PEDLDFSDVV LKYINHILME EDVEEKACMF QESAALQAAE RSFYEVIGEK  120
YPASADYQHV PKLDHSFENP DEKIFVVSND CCGSGDMETL CPDWNSDHNW NRFYGHCDTV  180
DVVSTSQSSY SSSSSSGTIK EGPIDSPVST LRIPDIFTDG QSAIQFKKGV EEASKFLPNG  240
SNLIVDLGYD ELSVKEQKEG SASLIVKVEK KTANEEFVDG SRGKKNPYQE SMSLHDERSN  300
KQSAVYTEST VSPDMFDKVL LCSGGKNESD LRKALNEVTK STPLNDQSKG SNGGKSGAKK  360
KGGKRNVVDM RTLLTLCAQA VAADDRRTAN EFLKQIRQHA TPTGDGMQRL AHYFADGLEA  420
RMAGSGTQIY TSLINMPTSA ADILKAYHIY LATCPFRKIS NFFSNKTIMN VAEKVTKLHI  480
IDFGILYGFQ WPCFLQRLSS RPGGPPKLRV TGIDLPCPGF RPSERVEETG RRLASYAETF  540
KVPFEFNAIA QKWETIKLED LKIKEDELLV VNCLYRFRNL LDETVIVNSP RNIVLNLIRK  600
MNPAVFVLGV VNGAYNAPFF ITRFREALFH YSSFFDMLDA NIPREIHERM LLEKTVFGRE  660
AMNVIACEAA ERIERPETYK QWQVRNMRAG FEQLPLDKEI MRIARDRVKS YHKDFVIDED  720
GHWLLQGWKG RIVYALSSWT PVY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	5e-53	377	741	25	379	Protein SCARECROW
5b3h_D	5e-53	377	741	25	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011085025.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085020.1	0.0	scarecrow-like protein 14
Refseq	XP_011085021.1	0.0	scarecrow-like protein 14
Refseq	XP_011085022.1	0.0	scarecrow-like protein 14
Refseq	XP_011085023.1	0.0	scarecrow-like protein 14
Refseq	XP_011085025.1	0.0	scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2Z7D3W7	0.0	A0A2Z7D3W7_9LAMI; Scarecrow-like protein 14-like
STRING	Migut.F00778.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]