PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011084902.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 676aa MW: 73512.6 Da PI: 6.7665 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21 | 6e-07 | 269 | 289 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f + G C Gd C +aHg XP_011084902.1 269 PCPEFKK-GSCAKGDACEYAHG 289 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 9.79E-15 | 30 | 152 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 4.3E-17 | 36 | 194 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 3.1E-9 | 73 | 144 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.057 | 77 | 107 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 14.69 | 77 | 152 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 4.43E-13 | 79 | 203 | No hit | No description |
SMART | SM00248 | 0.0011 | 112 | 144 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.327 | 112 | 147 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 9.1E-4 | 264 | 290 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.7E-4 | 268 | 290 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.605 | 269 | 291 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-5 | 269 | 289 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.15 | 299 | 323 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 25 | 299 | 322 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 676 aa Download sequence Send to blast |
MCGGSKSKLS PFDLKMEAGL QEEKEVILHK NCSKLLELAA TDDLAGFICE VEERGCDVDE 60 VSFWYGRSFG SRKMGFEERT PVMIASQYGS TEILKYIVGT GKVDVNRACG SDGATALHCA 120 AAGGSWSSVE VVKLLIDASA DHNLLDVNGK KPGDLIAPCV KSSSNSKRRT LEMLLNGISV 180 VEACDQEEEE GKTPRAVKDG SEKKEYPVDV SLPDINNGIY GTDEFRMYSF KVKPCSRAYS 240 HDWTECPFVH PGENARRRDP RKYHYTCVPC PEFKKGSCAK GDACEYAHGV FESWLHPAQY 300 RTRLCKDETG CSRKVCFFAH KPEELRPLYA STGSAMPSPK SVSVNSLDLT TLSPLSLGSS 360 SLMLPNSSTP PMSPSVSCSS PMGGSMWQNK INLTPPTLQL PGSRLKSTLS ARDMELDMEL 420 LGLEKIRTQQ RQQLVEEMAS LSSPYSRIGD LKPTNLDDVF GSLDPTLLSQ LQGLSPKVNT 480 TSSSHLQSPT GLQIRQNMNQ LRASYPSNVS SSPSRKPSAY GFDSSAAVAA AVMNSRSSAF 540 TKRSQSFIDR SGVGYRSSLS GSANSPSLMP SKLSEWSSPD GKLDWGFNGE EVNKLRKSAS 600 FGFRSGNTNT PSAMAASNID EPDVSWVNSL VKDVPAGGTS AGAYGGDQRQ RQGGVHDAMQ 660 QHWLDQMYIE QEQIVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011084902.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011084902.1 | 0.0 | zinc finger CCCH domain-containing protein 29 | ||||
Swissprot | Q9XEE6 | 0.0 | C3H29_ARATH; Zinc finger CCCH domain-containing protein 29 | ||||
TrEMBL | A0A2G9I581 | 0.0 | A0A2G9I581_9LAMI; CCCH-type Zn-finger protein | ||||
STRING | EOY17761 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2558 | 22 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40140.2 | 0.0 | C3H family protein |