PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011084561.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 531aa MW: 57554.7 Da PI: 6.0552 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 74.4 | 1.2e-23 | 205 | 248 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrC+RtDGKkWRCsr+v + +k+CErHlhrgr rsrk++e XP_011084561.1 205 DPEPGRCKRTDGKKWRCSREVAPHQKYCERHLHRGRPRSRKPVE 248 79***************************************998 PP | |||||||
2 | QLQ | 53.2 | 9.1e-19 | 150 | 184 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTaaQ+ +L++Q+++yKy+++++PvP++Ll++ + XP_011084561.1 150 PFTAAQWKELERQAMIYKYMISSVPVPAYLLFPFS 184 8******************************9975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.6E-12 | 149 | 185 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.641 | 150 | 185 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 7.9E-13 | 150 | 182 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.072 | 205 | 249 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.0E-19 | 206 | 248 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 531 aa Download sequence Send to blast |
MEKEAKIGSG FGVSHKKSSS NSHIVSSMKM QEMDAQTETQ AFPSKICMMP THHQETNPGR 60 PFAGSNDHSG GGGGAGGGGG GGGMEPTTNK SGANEVVGNT YRDDISSSHG DDENLAESTH 120 MQPFDNFTPS YSSFNPFKSP GVMAANVGFP FTAAQWKELE RQAMIYKYMI SSVPVPAYLL 180 FPFSRNFAGS SAASIGNGRY SRNGDPEPGR CKRTDGKKWR CSREVAPHQK YCERHLHRGR 240 PRSRKPVEVK NNGENHHKKT RLDQSRSLPT VQSSSTVSQE FVAANQPLLL FNAKTDLTIC 300 TPSYNETNRD LSVTVDEEMV GRDEGAEPPW LHPIEANMGL ANEGFSVYSS NNAPIFHQDY 360 VEQQPWDVFT YPNFEGQTGF VDTWSVDSMN ITDNRNLESC VSLNDGNGSP SLNLTMAMAA 420 ADVLGEEMRS IQMGTSVIDH NIKDSMWLSP VSWELFARGG PLGEALHPGS LVIGGSNPAS 480 PYNSISTPAT TVSSPSGVLQ RTLFSHSDGS VCNSPTLGPP LTTEAAIQWL N |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011084561.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011084561.1 | 0.0 | growth-regulating factor 7-like isoform X2 | ||||
TrEMBL | A0A2G9HZL0 | 1e-172 | A0A2G9HZL0_9LAMI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G53660.1 | 7e-37 | growth-regulating factor 7 |