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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011084330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 831aa MW: 91822.6 Da PI: 6.3994 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47.8 | 2.5e-15 | 29 | 85 | 5 | 57 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le++++++++p++ +r+++ ++ g++ +q kvWFqNrR +ek+ XP_011084330.1 29 ARYTEEQIEVLEKVYAECSNPNHYRRAQIMREQpilrGINNKQLKVWFQNRRCREKQ 85 579*****************************999********************97 PP | |||||||
2 | START | 115.8 | 6.4e-37 | 167 | 371 | 2 | 201 |
HHHHHHHHHHHHHHHC-TT-EEEE.EXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEE..ECTTEEEEE CS START 2 laeeaaqelvkkalaeepgWvkss.esengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlev..issggalql 93 laee+ +e+++ka ++ +W ++ ++ ++e++ ++ s ++ g a+ra++ ++++ + e+l ++ W++ ++ ++++++ +++gg+++l XP_011084330.1 167 LAEETKKEFLSKAIGTAVNWIPVPgLKLRNPESTGTIYVSATCIGVAARACVTIPGEPIKIIEILKNRL-SWSRSCRNMDVVAKypVENGGTIEL 260 78999*******************967777777777766666*****************8888888888.*************9556788***** PP EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHH CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrsl 184 ++++++a++ +++ Rdf+++Ry+ l +g++v++++S++ + p+ ++vR+++l+Sg+li+p+++g s++ ++h dl+++++++++r+l XP_011084330.1 261 IYTQYYAPTIMACaRDFWTLRYTSILDDGSFVVCEQSISGSDGAPSspvALEFVRGRMLVSGYLIRPCEGG-STIDLLDHLDLEASSVPEVVRPL 354 ***************************************9998887778899******************9.*********************** PP HHHHHHHHHHHHHHHTX CS START 185 vksglaegaktwvatlq 201 ++s+ ++ ++ v++l+ XP_011084330.1 355 YESSELMAKQMIVSALH 371 ******99999998886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-14 | 18 | 88 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.84E-13 | 20 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.171 | 22 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-10 | 23 | 90 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.3E-13 | 29 | 85 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.03E-12 | 30 | 87 | No hit | No description |
CDD | cd14686 | 5.01E-5 | 79 | 118 | No hit | No description |
PROSITE profile | PS50848 | 20.266 | 157 | 358 | IPR002913 | START domain |
SMART | SM00234 | 4.3E-24 | 166 | 376 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.14E-24 | 167 | 357 | No hit | No description |
Pfam | PF01852 | 4.5E-34 | 167 | 371 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.4E-18 | 203 | 351 | IPR023393 | START-like domain |
Pfam | PF08670 | 8.5E-31 | 688 | 830 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 831 aa Download sequence Send to blast |
MARTELAIGE GSQGGRGGRR GRPEGGRYAR YTEEQIEVLE KVYAECSNPN HYRRAQIMRE 60 QPILRGINNK QLKVWFQNRR CREKQKKENG NLALENRRLA TANKMLRQEN DGLQKKLAQV 120 LCENDHLRNQ VITLTSTITT YNLGRQPEAN DPQLPIRIGD NNSLLSLAEE TKKEFLSKAI 180 GTAVNWIPVP GLKLRNPEST GTIYVSATCI GVAARACVTI PGEPIKIIEI LKNRLSWSRS 240 CRNMDVVAKY PVENGGTIEL IYTQYYAPTI MACARDFWTL RYTSILDDGS FVVCEQSISG 300 SDGAPSSPVA LEFVRGRMLV SGYLIRPCEG GSTIDLLDHL DLEASSVPEV VRPLYESSEL 360 MAKQMIVSAL HFIEHVGNET NGKQIHSCHE DPAFLRSVSR RLCRGFNDAV NCFSEDGWTL 420 MNVNASDDII MSIKRTASFG VGANYDSIIC VKASLLLQNV IPASLVRLLK EHRSAWMDFN 480 FADHSVAFSK AACYAYPGPT IHNLSGTPVM LGHTNHDDEE LEVIRFERSA NQQHVSSGDL 540 YHLQVITGMD DTGFGACSEL IFAPIDRTIP NDAALLCSGF RIFLLGSNTG EDTGSSNIAP 600 NEALNARNAQ AAISHPLSML IVAFQFPSEA DLQEDVASMA RQYVKSVISS VKNISLRTMS 660 SGSNPVMHSH EANPAMGLKI PESTYFVNLA DLICQSYRSS LGVDMVGFNC ESTDSMLEQI 720 HHHHYAILCF SFMSLQACLY ANQAALNMLE TTLDNLHMLT VERILDGSNN LSLFSVFPTI 780 MQQGYAILPP GNCLSVTNRC VSYAQAVVWK VLAPDGSVHC LALALIDWSF V |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011084330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011084330.1 | 0.0 | homeobox-leucine zipper protein REVOLUTA-like isoform X1 | ||||
TrEMBL | A0A4D8ZLS6 | 0.0 | A0A4D8ZLS6_SALSN; Homeobox-leucine zipper protein | ||||
STRING | Migut.F01757.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15657 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |