PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011084325.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GATA
Protein Properties Length: 333aa    MW: 35906.2 Da    PI: 5.9855
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011084325.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17248281134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  XP_011084325.1 248 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 281
                     99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.3E-713332IPR016679Transcription factor, GATA, plant
SMARTSM004011.1E-16242292IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.503242278IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.5E-15246279IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577167.13E-15246305No hitNo description
CDDcd002023.27E-14247294No hitNo description
PROSITE patternPS003440248273IPR000679Zinc finger, GATA-type
PfamPF003202.3E-15248281IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGPNFMDEID CGNFFDQIDD LIEFPPENES GGGGGNLVSS VDSKAFSSMW NDALPESDPF  60
FSGSHGNSSS DLSAELSVPY EDIVQLEWLS TFMEDSFSGQ GMTVGKENLC PEMEPSDNQF  120
QTSSPISVLE SSSSSSTSSS SEAKAMPLSP SHRGPQRARS KRPRPATFNP RAAIQLISPT  180
SSFIETPQPF VAPGLSSESE NFAESTTMKK SPKPAGLEPK KKKKIKIASP VDAEDAHQNP  240
PAQAVRKCMH CEITKTPQWR AGPMGPKTLC NACGVRYKSG RLFPEYRPAA SPTFVPSLHS  300
NSHKKVLEMR GKVGPGTATT TPTTTKPEVI PNM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160164KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011084325.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0733494e-58KJ073349.1 Sesamum indicum clone TilSSR_44550 microsatellite Sesame_44550 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084325.10.0GATA transcription factor 8 isoform X1
TrEMBLA0A2G9GV451e-152A0A2G9GV45_9LAMI; GATA transcription factor
STRINGXP_009598426.11e-148(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-41GATA family protein