PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011084194.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 519aa    MW: 56550.9 Da    PI: 7.9435
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011084194.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.7e-09339386455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ah+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_011084194.1 339 AHSLAERVRREKISERMKVLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 386
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.85E-11333390No hitNo description
SuperFamilySSF474591.83E-17333405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.878335385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-17335403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6339386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-11341391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MKLKQARNEL NCSFFHPSWE NSVDQSDPFE SALSSMVSSP TASNANGNGS NGENVVLREL  60
IGRLGSICNS GEISPQQPYS INGNNSANTS CYSTPLNSPP KLNLSMMENQ QIRGNLQIPG  120
SHFPSLPSLA PFSTDPGFAE RAARFSCFAN KSLVGLNEMA PKLDSGKISR VSSNQSIKIS  180
GSHPMAVQES KDGGLQEAGI SASDKKFSRL SRSSTPENVE FGDSRENSSV SEQIPGGEIG  240
MNPQVDANSR KRKSIPKGKG KETPSAAANP AKDVNVASEN SESSAKRSKS EDGSANEKDA  300
AKTKADNTNQ KHSKDNSKPP EPPKDYIHVR ARRGQATDAH SLAERVRREK ISERMKVLQD  360
LVPGCNKVTG KAVMLDEIIN YVQSLQRQVE FLSMKLATVN PRMDFNMEAL MSKDMFQSRG  420
SLPHNMYPSD SYPFQSQPNL HTALPSASEA PFTANNFNSA LGRNQTMQLP PMDNFSETAS  480
QVSTFWEDDL HSVVQMGFSQ NQTQNFHGIL PTAQMKVEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248253SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011084194.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084194.20.0transcription factor bHLH78
TrEMBLA0A2G9GXS50.0A0A2G9GXS5_9LAMI; Uncharacterized protein
STRINGPOPTR_0002s23650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-94bHLH family protein