PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011084174.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NAC

Protein Properties

Length: 384aa MW: 44003.6 Da PI: 6.8714

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011084174.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.8	1e-53	14	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdee++ +yL kkv ++++ +i+e++++k+ePwdLpk++k +ekewyfF +rd+ky+tg r+nrat+sgyWkatgkdke+++ XP_011084174.1 14 LPPGFRFHPTDEEIIIHYLLKKVMDTRFAP-LAIAEAHLNKCEPWDLPKTAKRGEKEWYFFWQRDRKYPTGMRTNRATESGYWKATGKDKEIHKG 107 79***********************877.57***********999999**********************************996 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ lvg+kktLvfy grapkg+kt+W+mheyrle XP_011084174.1 108 rNSCLVGMKKTLVFYIGRAPKGQKTNWIMHEYRLE 142 56667**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-63	6	166	IPR003441	NAC domain
PROSITE profile	PS51005	58.234	14	166	IPR003441	NAC domain
Pfam	PF02365	1.5E-28	15	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MEADGMVTQA APGLPPGFRF HPTDEEIIIH YLLKKVMDTR FAPLAIAEAH LNKCEPWDLP 60 KTAKRGEKEW YFFWQRDRKY PTGMRTNRAT ESGYWKATGK DKEIHKGRNS CLVGMKKTLV 120 FYIGRAPKGQ KTNWIMHEYR LEGDFSNFNL SISAKEEWVV CRVFHKHKGI RTDPAHVELA 180 RKTTLDSPTL PPLTEYNFTK ERPNSSFATH EHEPEPHISS PRLMFINPKS QILQNDHNPY 240 FSSPHNQEPN PIFCPQIVDS NSMVPHHSSP SLVYQLLDEF ISTSTILADF PFKGADYQVN 300 LRIPAPDAGT KGPEKLSKMK HFTPNNSIAC HQDSGLISEM ATETTPFQSQ LGDIDESKNP 360 FDQEREEDLS FSPNISDLDS LWRY

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MEADGMVTQA APGLPPGFRF HPTDEEIIIH YLLKKVMDTR FAPLAIAEAH LNKCEPWDLP  60
KTAKRGEKEW YFFWQRDRKY PTGMRTNRAT ESGYWKATGK DKEIHKGRNS CLVGMKKTLV  120
FYIGRAPKGQ KTNWIMHEYR LEGDFSNFNL SISAKEEWVV CRVFHKHKGI RTDPAHVELA  180
RKTTLDSPTL PPLTEYNFTK ERPNSSFATH EHEPEPHISS PRLMFINPKS QILQNDHNPY  240
FSSPHNQEPN PIFCPQIVDS NSMVPHHSSP SLVYQLLDEF ISTSTILADF PFKGADYQVN  300
LRIPAPDAGT KGPEKLSKMK HFTPNNSIAC HQDSGLISEM ATETTPFQSQ LGDIDESKNP  360
FDQEREEDLS FSPNISDLDS LWRY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-50	14	167	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-50	14	167	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-50	14	167	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-50	14	167	17	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-50	14	167	20	169	NAC domain-containing protein 19
3swm_B	1e-50	14	167	20	169	NAC domain-containing protein 19
3swm_C	1e-50	14	167	20	169	NAC domain-containing protein 19
3swm_D	1e-50	14	167	20	169	NAC domain-containing protein 19
3swp_A	1e-50	14	167	20	169	NAC domain-containing protein 19
3swp_B	1e-50	14	167	20	169	NAC domain-containing protein 19
3swp_C	1e-50	14	167	20	169	NAC domain-containing protein 19
3swp_D	1e-50	14	167	20	169	NAC domain-containing protein 19
4dul_A	1e-50	14	167	17	166	NAC domain-containing protein 19
4dul_B	1e-50	14	167	17	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011084174.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011084174.1	0.0	protein CUP-SHAPED COTYLEDON 3-like
Swissprot	Q9FK44	1e-85	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A0M4FBP6	1e-102	A0A0M4FBP6_MANES; NAC transcription factors 15
STRING	cassava4.1_010179m	1e-103	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	3e-87	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]