PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011084032.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C2H2 | ||||||||
Protein Properties | Length: 237aa MW: 27178.7 Da PI: 8.1816 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.00058 | 114 | 137 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+k+F+ L +H + H XP_011084032.1 114 WQCGYCKKVFRAEKFLDQHFDNrH 137 58**********999999976655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 116 | 137 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MSGREMGKKR ASPVHSIFLL LMALQLFSAT SSLSHSYSDE GIDETASRTL KEEEPQVHCS 60 RERSRAAWKI IEEYLLPFVE REKYQLSSQC RLHPNNDIFR DQEEHKIHID INDWQCGYCK 120 KVFRAEKFLD QHFDNRHYNL LNVSHGKCLA DLCGALHCDF VMKSQSRKTK CNPAAAARNR 180 HLCEDLADSC FPVNEGPSAA RLHEFFLRQF CDAHSCSRGR KPFSGGGRRN EKGNTTA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011084032.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011084032.1 | 1e-179 | uncharacterized protein LOC105166382 isoform X2 | ||||
TrEMBL | A0A4D8ZKG3 | 1e-118 | A0A4D8ZKG3_SALSN; Uncharacterized protein | ||||
STRING | Migut.I00466.1.p | 1e-119 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63280.1 | 1e-98 | C2H2-like zinc finger protein |