PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

C2H2

Protein Properties

Length: 548aa MW: 57792.2 Da PI: 8.8309

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011083713.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	75	97	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_011083713.1 75 FVCEICNKGFQRDQNLQLHRRGH 97 89*******************88 PP
2	zf-C2H2	17	1.7e-05	151	173	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k + +s+ k H++t+ XP_011083713.1 151 YKCERCSKKYAVQSDWKAHMKTC 173 9********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.86E-8	74	97	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-5	74	97	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12874	0.0023	75	97	No hit	No description
SMART	SM00355	0.017	75	97	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	75	97	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	77	97	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	116	146	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.4E-5	139	172	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.86E-8	146	172	No hit	No description
SMART	SM00355	43	151	171	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence Send to blast
MQETMVEIEN SSPLSVSPAS GEAHILTVDN QIKADQSAET ILQPTKKKRS LPGMPDPDAE 60 VIALSPKTLL ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRTSKD IRKRVYVCPE 120 PTCVHHDPSR ALGDLTGIKK HFCRKHGEKK YKCERCSKKY AVQSDWKAHM KTCGTREYRC 180 DCGTLFSRRD SFITHRAFCD ALAQESARSQ PSVLPTSGGD MKVKLVEPPP PAASSPPPPP 240 LTPSTGVLSP VLSIRSSAAE LPENHSANFP PPPPGPAALT SSIATTITTT TPAIATATAT 300 VTTSSCSTSG SNVPGNGTVF AHTFSSSASG LGQSSQEPAS YSSILCAMAG SHQPAVDPMS 360 LSLSSPFHSP SPLFSATSQS PQPHYVSRPQ PALSATALLQ KAAQMGATSS NPSFLRGLGL 420 ALPSPSDPQE NTSTMASTSS TTPTHWSSSV KLENNSLASG LGLGLPSSGS SSLNELMMTP 480 STLFGNKPAT LDFLGLGMGA GEASPGGFSA FLSSIGGRLN MATTASFPGV RPAGETWNDS 540 PERKPSML

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence Send to blast

MQETMVEIEN SSPLSVSPAS GEAHILTVDN QIKADQSAET ILQPTKKKRS LPGMPDPDAE  60
VIALSPKTLL ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRTSKD IRKRVYVCPE  120
PTCVHHDPSR ALGDLTGIKK HFCRKHGEKK YKCERCSKKY AVQSDWKAHM KTCGTREYRC  180
DCGTLFSRRD SFITHRAFCD ALAQESARSQ PSVLPTSGGD MKVKLVEPPP PAASSPPPPP  240
LTPSTGVLSP VLSIRSSAAE LPENHSANFP PPPPGPAALT SSIATTITTT TPAIATATAT  300
VTTSSCSTSG SNVPGNGTVF AHTFSSSASG LGQSSQEPAS YSSILCAMAG SHQPAVDPMS  360
LSLSSPFHSP SPLFSATSQS PQPHYVSRPQ PALSATALLQ KAAQMGATSS NPSFLRGLGL  420
ALPSPSDPQE NTSTMASTSS TTPTHWSSSV KLENNSLASG LGLGLPSSGS SSLNELMMTP  480
STLFGNKPAT LDFLGLGMGA GEASPGGFSA FLSSIGGRLN MATTASFPGV RPAGETWNDS  540
PERKPSML

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-34	147	208	3	64	Zinc finger protein JACKDAW
5b3h_F	6e-34	147	208	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011083713.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ042205	4e-56	KJ042205.1 Sesamum indicum clone TilSSR_13406 microsatellite Sesame_13406 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083713.1	0.0	protein indeterminate-domain 2-like isoform X1
Swissprot	Q9LVQ7	1e-139	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A2Z7AM57	0.0	A0A2Z7AM57_9LAMI; Zinc finger protein JACKDAW-like
STRING	XP_009805007.1	1e-180	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-113	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]