PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011083639.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family SRS
Protein Properties Length: 342aa    MW: 37451.2 Da    PI: 7.9891
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011083639.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702227.42.7e-701112683154
          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrel..kskkqsalsstkl 91 
                     + +++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa+++++ +++     ++++kr re+     ++sal++t+ 
  XP_011083639.1 111 NEGMNCQDCGNQAKKDCQHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQDHHQQQlttrGDQNPKRLRENpgGGGASSALACTTS 205
                     5679****************************************************999888877766555666666666654556667777776 PP

          DUF702  92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                         +++ +e  ++P+ev+s+avfrcvrvs+vdd+ee+laYqtav+igGhvfkGiLydqG+e+
  XP_011083639.1 206 RLPATTSGFELGHFPPEVNSPAVFRCVRVSAVDDAEEHLAYQTAVNIGGHVFKGILYDQGPET 268
                     6667778899999************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051426.4E-68113267IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.2E-27115157IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.1E-26218266IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSGFFSLGGK DQDQDQQTDT NNSLFLFKNE EIYNKGFELW QQYYQLHQQR LHSYQHQTQH  60
LSIQDVDFSV GPSSSSRRNN NLINSLGDES SHYSYRSAAG FRVMRQGRGG NEGMNCQDCG  120
NQAKKDCQHL RCRTCCKSRG FQCQTHVKST WVPAAKRRER QQQLAALQQD HHQQQLTTRG  180
DQNPKRLREN PGGGGASSAL ACTTSRLPAT TSGFELGHFP PEVNSPAVFR CVRVSAVDDA  240
EEHLAYQTAV NIGGHVFKGI LYDQGPETRY PPGGGGESSS GGGGGGSQQQ PLDFIAAAAA  300
TSSATATTTT SNPNITMLDP SLYPTPLTAF MAGTQFFPPP RH
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011083639.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0629572e-56KJ062957.1 Sesamum indicum clone TilSSR_34158 microsatellite Sesame_34158 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083639.10.0protein SHI RELATED SEQUENCE 5-like
SwissprotQ9LQZ54e-90SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A2Z7AIB31e-152A0A2Z7AIB3_9LAMI; SHI-related sequence 7
STRINGGorai.002G125600.11e-119(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.14e-73SHI-related sequence 5
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]