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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011083617.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | TALE | ||||||||
Protein Properties | Length: 453aa MW: 50457.5 Da PI: 6.5133 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.6 | 1.2e-09 | 378 | 415 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gL+++qV++WF N R + XP_011083617.1 378 FEHflHPYPNDSEKLMLASQTGLSKNQVSNWFINARVR 415 664459******************************88 PP | |||||||
2 | BELL | 91.8 | 6.8e-30 | 247 | 311 | 8 | 72 |
BELL 8 kkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 kLl lleeV++rY+ y++ ++ ++ssFe++aglg+ k+Yt+lAl+a+S+hF +L++ai++qi XP_011083617.1 247 NLIKLLALLEEVERRYEEYYHHMEELVSSFEVIAGLGAGKSYTALALQAMSKHFCSLRNAIVSQI 311 567*************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 5.3E-28 | 172 | 309 | IPR006563 | POX domain |
Pfam | PF07526 | 4.0E-36 | 178 | 308 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.969 | 356 | 419 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-9 | 359 | 423 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.35E-11 | 359 | 420 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-27 | 364 | 425 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.63E-17 | 365 | 426 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.1E-17 | 376 | 415 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MVSEDSPSNS NSSILHQFII STSIANQNHF GNQHFDAYGA TDSVSNSPYP HSLPLSIQFL 60 GDRISRSVDL VHHAPHLSDD SDIGHDRRLM DLLGRSTEAA QPAQRLSLSL GSVPCRQRPL 120 NSSLLNPSYL SSGDAARESC NLGIDRVIND YSFTGTAFAS LNQSCSTSYG TESFAAAIGS 180 SKYLKPAQSI LEEMVSVGGK DTDISNQRYV EKLSRGSRKG SHGLSSELKA ELSNGELLPE 240 KHGNYTNLIK LLALLEEVER RYEEYYHHME ELVSSFEVIA GLGAGKSYTA LALQAMSKHF 300 CSLRNAIVSQ IRATKQKIEK EMPKISSRLS QLSLFDQEAR QNRISLQQLG LMHNSRQAWR 360 PIRGLPETSV TILRAWLFEH FLHPYPNDSE KLMLASQTGL SKNQVSNWFI NARVRLWKPM 420 IEEMYKEEFA DSSTESDQLL TREGVGDSAE ELN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 6e-17 | 365 | 422 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 6e-17 | 365 | 422 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011083617.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083617.1 | 0.0 | BEL1-like homeodomain protein 11 | ||||
Swissprot | Q1PFD1 | 9e-98 | BLH11_ARATH; BEL1-like homeodomain protein 11 | ||||
TrEMBL | A0A2G9HZS4 | 0.0 | A0A2G9HZS4_9LAMI; Transcription factor MEIS1 | ||||
STRING | VIT_18s0001g13130.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8602 | 22 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75430.1 | 4e-87 | BEL1-like homeodomain 11 |