PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011083447.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NAC
Protein Properties Length: 227aa    MW: 25630.8 Da    PI: 8.2749
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011083447.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM124.49.9e-39161401127
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgkdkevls 94 
                     lppGfrF+Ptd+e+v +yL++k+ +++l+    i+e+d+ +++Pw+Lp    +++++ yfFs+++ +++ +g+r +r t sg Wkatg++k++++
  XP_011083447.1  16 LPPGFRFQPTDQEIVFQYLARKTFSHPLPP-LLIPEIDVSTFDPWELP---GNSDQDKYFFSNKEGNTRrNGDRISRGTCSGHWKATGSTKRIIC 106
                     79*************************988.67***************...446789999999987665379*********************99 PP

             NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyr 127
                       +   vg++k+Lvfykg++p + +tdW+mhey 
  XP_011083447.1 107 PkRMPIVGIRKSLVFYKGKNPLACRTDWIMHEYF 140
                     8455569**************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-4514175IPR003441NAC domain
PROSITE profilePS5100546.62116175IPR003441NAC domain
PfamPF023651.6E-2117139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEKYCLNVAG DGGSKLPPGF RFQPTDQEIV FQYLARKTFS HPLPPLLIPE IDVSTFDPWE  60
LPGNSDQDKY FFSNKEGNTR RNGDRISRGT CSGHWKATGS TKRIICPKRM PIVGIRKSLV  120
FYKGKNPLAC RTDWIMHEYF IALSGHMDCD MQQKKNSQGS LVRIGNWSLC RVFLKKRISS  180
TAEEVEENYD GYNPRKYDHF ITGADDDVTS DTDSCSASSS SSSSPPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-341617615169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011083447.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0661655e-35KJ066165.1 Sesamum indicum clone TilSSR_37366 microsatellite Sesame_37366 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083447.11e-172NAC domain-containing protein 83
SwissprotQ9FY936e-52NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A2G9GSQ54e-76A0A2G9GSQ5_9LAMI; Uncharacterized protein
STRINGMigut.D01296.1.p5e-76(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13872377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-53NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]