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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_011083211.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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| Family |
C2H2 |
| Protein Properties |
Length: 448aa MW: 49615.8 Da PI: 9.0136 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_011083211.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 18.6 | 5.2e-06 | 53 | 75 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C++C++ F r nL+ H r+H
XP_011083211.1 53 YVCEICNQGFQRDQNLQMHRRRH 75
9*********************9 PP
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| 2 | zf-C2H2 | 16 | 3.3e-05 | 130 | 152 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C+k + +s++k H++t+
XP_011083211.1 130 WVCEKCSKGYAVQSDYKAHLKTC 152
58*******************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009590 | Biological Process | detection of gravity |
| GO:0009959 | Biological Process | negative gravitropism |
| GO:0009965 | Biological Process | leaf morphogenesis |
| GO:0010031 | Biological Process | circumnutation |
| GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process |
| GO:0048444 | Biological Process | floral organ morphogenesis |
| GO:2000012 | Biological Process | regulation of auxin polar transport |
| GO:2000904 | Biological Process | regulation of starch metabolic process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 448 aa
Download sequence Send
to blast |
MLSNVNPSPP TEPFSSSDNG TAGKRKRRPA GTPDPDAEVV SLSPKTLLES DRYVCEICNQ 60
GFQRDQNLQM HRRRHKVPWK LLKRETPIVR KRVFVCPEPS CLHHDPCHAL GDLVGIKKHF 120
RRKHSNQKQW VCEKCSKGYA VQSDYKAHLK TCGTRGHSCD CGRVFSRVES FIEHQDACSM 180
GRLRSESHPL QPPPPCLSRT ASSPSPSSDT NLSVAPWASA AAAALALPKP TEPIFLSTPA 240
AVTTPRNNSR PPNLELQLLT KASTSAVDTK PDEDHSMQLQ LSIGSSEING EKTEAENANM 300
SSINNASRCS PRESSTTSAA AAVSLKEQAQ EQLRLAMAEK VYAEEARRQA KRQIELAEQE 360
FANAKRIRQQ AQAELEKAQA LKEQATKQIN STMLQITCHS CRHKFQTQTA PQLFGETSTT 420
SSRDNSSIGL SYISAALREW DVKNRNEN
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Kim JY,Ryu JY,Baek K,Park CM
High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
New Phytol., 2016. 209(1): p. 265-79
[PMID:26256266] - Ryu JY,Kim JY,Park CM
Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
Plant Signal Behav, 2015. 10(11): p. e1093715
[PMID:26452406] - Qu Y, et al.
Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
J. Exp. Bot., 2017. 68(17): p. 4851-4867
[PMID:28992128] - Shi H, et al.
Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
J. Pineal Res., 2018. 65(2): p. e12494
[PMID:29607541]
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