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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_011083064.1 |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family |
bHLH |
Protein Properties |
Length: 519aa MW: 55493.3 Da PI: 5.11 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_011083064.1 | genome | NCBI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 35.8 | 1.5e-11 | 330 | 372 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+k+L
XP_011083064.1 330 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 372
79*********************66......****************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 519 aa
Download sequence Send
to blast |
MNSMVWIEGS GEEEIASWAK SNNHGGFENN EDMEMGALCT FNSMLEAEDD DWYTTNAAAG 60 GGGAMHGGQH VISFLNESGG NNNQLLLQAV DSSASCSAAS ASVFNNLDPS HHQVSYFLPQ 120 KSLSQTIPNY PFEGTIDLGC ENGILENRGG GILVGGGGGG GLSDLGAQYL LGTLNLCPNN 180 PQFGANSFLQ LPQSSGGSSL LFNKPKILKP LDNFASVGAQ PTLFQKRAAL RRNLGSNLGS 240 LNLVNQMSLK SPSSGAIGEV NEKKRKASSV DDLEDISIDG TNLNYDSEDQ VFENSSANKL 300 EESDKNGGNS SITGGDQKGK KKGPPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS 360 ILGDAIDYLK ELLQKINDLH NELESTPSSS SLTPAASLYP LSPMASGLPA CIKEERSSPR 420 AFVSPLSSPT GQPARVEVRL REGRGVNIHM FCCCSPGILL STMRAIDNLG LDIQQAVISC 480 FNGFAMDIFQ AEQCREGHEL HPDQIKAVLL DSAGFPGMV
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 1e-13 | 325 | 382 | 6 | 63 | Transcription factor MYC2 |
5gnj_B | 1e-13 | 325 | 382 | 6 | 63 | Transcription factor MYC2 |
5gnj_E | 1e-13 | 325 | 382 | 6 | 63 | Transcription factor MYC2 |
5gnj_F | 1e-13 | 325 | 382 | 6 | 63 | Transcription factor MYC2 |
5gnj_G | 1e-13 | 325 | 382 | 6 | 63 | Transcription factor MYC2 |
5gnj_I | 1e-13 | 325 | 382 | 6 | 63 | Transcription factor MYC2 |
5gnj_M | 1e-13 | 325 | 382 | 6 | 63 | Transcription factor MYC2 |
5gnj_N | 1e-13 | 325 | 382 | 6 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization
Signal ? help
Back to Top |
 |
No. |
Start |
End |
Sequence |
1 | 319 | 337 | KKKGPPAKNLMAERRRRKK |
2 | 331 | 338 | ERRRRKKL |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ059034 | 4e-56 | KJ059034.1 Sesamum indicum clone TilSSR_30235 microsatellite Sesame_30235 sequence. |