PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_011082627.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

GRAS

Protein Properties

Length: 601aa MW: 67759.2 Da PI: 5.2226

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011082627.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	287.9	2.9e-88	231	599	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPilk 92 lv+lLl++Ae v+++ +ela++++ r +as +g+p+qR+a+yf+eAL+++++r++ ++ + + ++ ++++ +l ++ ++ P+++ XP_011082627.1 231 LVNLLLAAAENVATQRFELATKFVVRCLWMASDSGTPVQRIAFYFAEALQEKINRESGRIINEKKKQPGKQQKLGLALGTNNTflaSHQELPFIQ 325 689**************************************************999999988888888888666666666622235678 PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187 + +++ q+I+e v+++ ++H iD++i G+QW aL+q La+ ++ +l+iT+vg g+++ +eetg+rL fA++l++pf+f+ ++ ++++ XP_011082627.1 326 VMQFAGMQTIVEHVKTAGKIHLIDLQIRSGIQWTALMQGLAD--SPIQHLKITAVGT---GDQRYVEETGNRLLCFAQSLNLPFSFKSVYLTDMK 415 *************************************9..6777*****...89***************************** PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 +++ + L+++ +E+++V + + l ++ + + +le+ +++++ +l+P+++vv+e ea+hns+sF++rf+ea+ +ysa+fd+le + r++++r XP_011082627.1 416 AFKEDLLNIEADETVVVYSNIILRSMISMPDCLEN----LMRTITRLKPTLMVVTEVEANHNSPSFVDRFMEAFLFYSAFFDCLEDCMDRNNKHR 506 *****************99999966666666....**************************************************** PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + +E +lg+ i n+va g+er+ r +l Wr+ ++++G+ +++ls++ qa+l l++++ ++ ++e++ + l+ gWk+ pL s++aW+ XP_011082627.1 507 TILESTYLGKGILNIVADDGQERFTRSVKLDVWRAFFMRFGMIEIELSDSSRYQASLTLKQFAqGNSCTLESNGKGLTVGWKGTPLHSLTAWK 599 ***********************************************************888899*********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	42.679	205	578	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-85	231	599	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence Send to blast
MILDHSTRER SASMENAYLF PSFQFCDYDP VVVGYARDEA ASRSRISTIT KEDPFLEMDE 60 SGFMDLFSSL FGQENTQQDV ERKGDDQLIM IGGVPQTVSA SGCSMLKQIE TETNLIEARK 120 HEDIQPPPAV SEFSRHLKNN PVSVFPPPAS WDLLNNYGKG FRMSRDENLN CLENESDVGG 180 RRLSMDEILR VGGERFIQFS TKSVDGISMF IHPYASSLSG LSMDDARDVE LVNLLLAAAE 240 NVATQRFELA TKFVVRCLWM ASDSGTPVQR IAFYFAEALQ EKINRESGRI INEKKKQPGK 300 QQKLGLALGT NNTFLASHQE LPFIQVMQFA GMQTIVEHVK TAGKIHLIDL QIRSGIQWTA 360 LMQGLADSPI QHLKITAVGT GDQRYVEETG NRLLCFAQSL NLPFSFKSVY LTDMKAFKED 420 LLNIEADETV VVYSNIILRS MISMPDCLEN LMRTITRLKP TLMVVTEVEA NHNSPSFVDR 480 FMEAFLFYSA FFDCLEDCMD RNNKHRTILE STYLGKGILN IVADDGQERF TRSVKLDVWR 540 AFFMRFGMIE IELSDSSRYQ ASLTLKQFAQ GNSCTLESNG KGLTVGWKGT PLHSLTAWKF 600 S

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence Send to blast

MILDHSTRER SASMENAYLF PSFQFCDYDP VVVGYARDEA ASRSRISTIT KEDPFLEMDE  60
SGFMDLFSSL FGQENTQQDV ERKGDDQLIM IGGVPQTVSA SGCSMLKQIE TETNLIEARK  120
HEDIQPPPAV SEFSRHLKNN PVSVFPPPAS WDLLNNYGKG FRMSRDENLN CLENESDVGG  180
RRLSMDEILR VGGERFIQFS TKSVDGISMF IHPYASSLSG LSMDDARDVE LVNLLLAAAE  240
NVATQRFELA TKFVVRCLWM ASDSGTPVQR IAFYFAEALQ EKINRESGRI INEKKKQPGK  300
QQKLGLALGT NNTFLASHQE LPFIQVMQFA GMQTIVEHVK TAGKIHLIDL QIRSGIQWTA  360
LMQGLADSPI QHLKITAVGT GDQRYVEETG NRLLCFAQSL NLPFSFKSVY LTDMKAFKED  420
LLNIEADETV VVYSNIILRS MISMPDCLEN LMRTITRLKP TLMVVTEVEA NHNSPSFVDR  480
FMEAFLFYSA FFDCLEDCMD RNNKHRTILE STYLGKGILN IVADDGQERF TRSVKLDVWR  540
AFFMRFGMIE IELSDSSRYQ ASLTLKQFAQ GNSCTLESNG KGLTVGWKGT PLHSLTAWKF  600
S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-37	239	598	27	378	Protein SCARECROW
5b3h_A	2e-37	239	598	26	377	Protein SCARECROW
5b3h_D	2e-37	239	598	26	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011082627.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011082627.1	0.0	DELLA protein RGL1-like
TrEMBL	A0A2G9HDJ7	0.0	A0A2G9HDJ7_9LAMI; Uncharacterized protein
STRING	Migut.N00927.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4694	18	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	4e-53	RGA-like 2