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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011082623.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | AP2 | ||||||||
Protein Properties | Length: 334aa MW: 37814.8 Da PI: 9.0283 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.1 | 7.1e-16 | 46 | 106 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkklege 56 s y+GV++++++gr++A+++d ++n k+ ++++lg ++ +e Aa a++ a++k++g+ XP_011082623.1 46 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDEEEAAAHAYDLAALKYWGH 106 57*******************999955656446*************************997 PP | |||||||
2 | AP2 | 51.4 | 2.7e-16 | 148 | 199 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g XP_011082623.1 148 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 199 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.1E-13 | 46 | 106 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.12E-17 | 46 | 115 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.6E-27 | 47 | 119 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-16 | 47 | 114 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.165 | 47 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 48 | 59 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.54E-22 | 148 | 209 | No hit | No description |
Pfam | PF00847 | 5.1E-12 | 148 | 199 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-18 | 148 | 209 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-24 | 149 | 213 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.334 | 149 | 207 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-17 | 149 | 208 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 189 | 209 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MAKSSKRKNS TAAATTTSHN NNDNCTTKTK RRRKSVPRES PQQRSSIYRG VTRHRWTGRY 60 EAHLWDKNCW NESQNKKGRQ VYLGAYDEEE AAAHAYDLAA LKYWGHDTIL NFPLSTYQNE 120 LKEMEGQSKE EYISALRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY 180 ATQEEAATAY DMAAIEYRGL NAVTNFDLSR YIKWLKPDHP NPGADGIKSN DDETHTKTSE 240 TTTAAVLPRP ATTSSSSALG LLLQSSKFKE MLELQTAAGY GSPSEPDPPR RSFPDDIQTS 300 FDFQDLSSFA EEHDVMFGNY EPLAPPMFHY GLDA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011082623.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011082623.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 | ||||
Swissprot | Q94AN4 | 1e-114 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A2K2B973 | 1e-161 | A0A2K2B973_POPTR; Uncharacterized protein | ||||
STRING | XP_009757386.1 | 1e-158 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1815 | 24 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 1e-101 | ARIA-interacting double AP2 domain protein |
Publications ? help Back to Top | |||
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