PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

C2H2

Protein Properties

Length: 421aa MW: 46796.7 Da PI: 8.7856

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011082586.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.5e-05	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_011082586.1 79 FICEICNKGFQRDQNLQLHRRGH 101 89*******************88 PP
2	zf-C2H2	12.5	0.00046	155	177	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_011082586.1 155 WKCEKCSKIYAVQSDWKAHSKTC 177 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.1E-5	78	101	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.1E-6	78	101	No hit	No description
SMART	SM00355	0.022	79	101	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	4.9E-5	79	101	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.845	79	101	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	81	101	IPR007087	Zinc finger, C2H2
SMART	SM00355	260	120	150	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.9E-4	143	176	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.1E-6	150	175	No hit	No description
SMART	SM00355	170	155	175	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MFPAVMSNSN PVSEEASISS AGPRVQDFGS LNQLLHKSTS SNHHQPLKTK KKRNLPGNPD 60 PDAEVIALSP KTLLATNRFI CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NSKENKKRAY 120 VCPEPTCVHH HPSRALGDLT GIKKHYCRKH GEKKWKCEKC SKIYAVQSDW KAHSKTCGTR 180 EYRCDCGTLF SRKDSFITHR AFCDALAEES ARLSAATHSI FANNIANPHS FHFNPQYPLP 240 PPPPPPPSFL PFSSHNRHFP NPWDPPPPQS PNPTSHPQDQ VHIKNEALHI PLSSSSPPLY 300 QERSLMTSPA LGTLQVSSGA QLPPLSATAL LQKAAAVGHV SSTMAQLDMQ MTAAAGWQKN 360 DRFTRDFLGL AGEQCGGNGN VRELLHFTPY DDDDDDQSLL KHQGFGYAET CTQTAWGNCN 420 C

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MFPAVMSNSN PVSEEASISS AGPRVQDFGS LNQLLHKSTS SNHHQPLKTK KKRNLPGNPD  60
PDAEVIALSP KTLLATNRFI CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NSKENKKRAY  120
VCPEPTCVHH HPSRALGDLT GIKKHYCRKH GEKKWKCEKC SKIYAVQSDW KAHSKTCGTR  180
EYRCDCGTLF SRKDSFITHR AFCDALAEES ARLSAATHSI FANNIANPHS FHFNPQYPLP  240
PPPPPPPSFL PFSSHNRHFP NPWDPPPPQS PNPTSHPQDQ VHIKNEALHI PLSSSSPPLY  300
QERSLMTSPA LGTLQVSSGA QLPPLSATAL LQKAAAVGHV SSTMAQLDMQ MTAAAGWQKN  360
DRFTRDFLGL AGEQCGGNGN VRELLHFTPY DDDDDDQSLL KHQGFGYAET CTQTAWGNCN  420
C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-36	151	215	3	67	Zinc finger protein JACKDAW
5b3h_F	1e-36	151	215	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011082586.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011082586.1	0.0	protein indeterminate-domain 12
Swissprot	O22759	1e-122	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	B9GSI6	1e-162	B9GSI6_POPTR; Uncharacterized protein
STRING	POPTR_0002s04880.1	1e-163	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-114	indeterminate(ID)-domain 12

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]