PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

GATA

Protein Properties

Length: 359aa MW: 39965.5 Da PI: 6.7386

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011081778.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	55.1	1e-17	245	279	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l XP_011081778.1 245 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 279 99*****************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	7.6E-79	18	336	IPR016679	Transcription factor, GATA, plant
PROSITE profile	PS50114	12.374	239	275	IPR000679	Zinc finger, GATA-type
SMART	SM00401	7.9E-18	239	289	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.4E-14	240	276	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	1.19E-15	240	303	No hit	No description
CDD	cd00202	9.44E-15	244	291	No hit	No description
PROSITE pattern	PS00344	0	245	270	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	1.3E-15	245	279	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
METPEFFETN YYHAQHTPER RLPDPKTGDH FIIDDLLDLP NDETMVAADG CLDAAMAGTS 60 TESSSATPVD TSCNSSFSTA EPHFLAADIV GHRSLADGHF SSELCVPYDD LAELEWLSNF 120 VEESFSSDDM QKMQLIQGVK ARTNEDSESH HYQFQPEASR PGPILRSEMS VPAKARSKRS 180 RAAPGNWTSR LLVVSPTPAA PDVPAMSSSS ESDVATTAGK KSTKPAGQKK KEVPDSSTGG 240 EGRKCLHCAT DKTPQWRTGP MGPKTLCNAC GVRYKSGRLV PEYRPAASPT FVLTKHSNSH 300 RKVLELRRQK EMLRTQQQQQ QFLHHHHHHH HHQSMMFDVS NSDDYLIHQH IGPDFRQLI

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

METPEFFETN YYHAQHTPER RLPDPKTGDH FIIDDLLDLP NDETMVAADG CLDAAMAGTS  60
TESSSATPVD TSCNSSFSTA EPHFLAADIV GHRSLADGHF SSELCVPYDD LAELEWLSNF  120
VEESFSSDDM QKMQLIQGVK ARTNEDSESH HYQFQPEASR PGPILRSEMS VPAKARSKRS  180
RAAPGNWTSR LLVVSPTPAA PDVPAMSSSS ESDVATTAGK KSTKPAGQKK KEVPDSSTGG  240
EGRKCLHCAT DKTPQWRTGP MGPKTLCNAC GVRYKSGRLV PEYRPAASPT FVLTKHSNSH  300
RKVLELRRQK EMLRTQQQQQ QFLHHHHHHH HHQSMMFDVS NSDDYLIHQH IGPDFRQLI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250\|UniProtKB:Q8LAU9, ECO:0000269\|PubMed:25265867}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011081778.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ046279	3e-59	KJ046279.1 Sesamum indicum clone TilSSR_17480 microsatellite Sesame_17480 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011081778.1	0.0	GATA transcription factor 12-like
Swissprot	P69781	2e-89	GAT12_ARATH; GATA transcription factor 12
TrEMBL	A0A2Z7BRK2	1e-163	A0A2Z7BRK2_9LAMI; GATA transcription factor
STRING	XP_010249552.1	1e-158	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1919	23	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25830.1	1e-82	GATA transcription factor 12

Publications ? help Back to Top
Ravindran P,Verma V,Stamm P,Kumar PP A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor. Mol Plant, 2017. 10(10): p. 1307-1320 [PMID:28917589]