PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011081776.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

HD-ZIP

Protein Properties

Length: 841aa MW: 92750.2 Da PI: 6.3692

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011081776.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.3	6.5e-19	20	78	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ XP_011081776.1 20 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78 5679*****************************************************97 PP
2	START	184.3	6.6e-58	164	372	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++++l+v+s+g g+++l XP_011081776.1 164 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVASRACGLVGLEPT-RVAEILKDRPSWYRDCRAVDVLNVLSTGsgGTVELL 257 789*****************************************************.8888888888********************** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++l+a+++l+p Rdf+ +Ry+ +++g++v++++S++++q+ p+ +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l+ XP_011081776.1 258 YMQLYAPTTLAPaRDFWLLRYTSVMEDGSLVVCERSLNNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLY 352 ***************************************9988899***************************************** PP HHHHHHHHHHHHHHTXXXXX CS START 186 ksglaegaktwvatlqrqce 205 +s++ +++t++a+l+++++ XP_011081776.1 353 ESSTLLAQRTTLAALRQLRQ 372 **************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.661	15	79	IPR001356	Homeobox domain
SMART	SM00389	1.3E-15	17	83	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.64E-17	19	83	IPR009057	Homeodomain-like
CDD	cd00086	1.26E-16	20	80	No hit	No description
Pfam	PF00046	1.6E-16	21	78	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.0E-18	22	78	IPR009057	Homeodomain-like
CDD	cd14686	1.15E-6	72	111	No hit	No description
PROSITE profile	PS50848	26.392	154	369	IPR002913	START domain
CDD	cd08875	4.87E-81	158	373	No hit	No description
SuperFamily	SSF55961	1.92E-37	163	373	No hit	No description
Gene3D	G3DSA:3.30.530.20	1.5E-23	163	369	IPR023393	START-like domain
SMART	SM00234	7.1E-42	163	373	IPR002913	START domain
Pfam	PF01852	2.1E-55	164	372	IPR002913	START domain
Pfam	PF08670	7.0E-52	698	840	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 841 aa Download sequence Send to blast
MMAVTSACKD SSKMGVDNGK YVRYTPEQVE ALERLYHECP KPSSLRRQQL IRECPILSNI 60 EPKQIKVWFQ NRRCREKQRK EASRLQAVNR KLTAMNKLLM EENDRLQKQV SQLVYENSYF 120 RQQTQNTTLA TTDNSCESVV TSGQHHLTPQ HPPRDASPAG LLSIAEETLT EFLSKATGTA 180 VEWVQMPGMK PGPDSIGIIA ISHGCTGVAS RACGLVGLEP TRVAEILKDR PSWYRDCRAV 240 DVLNVLSTGS GGTVELLYMQ LYAPTTLAPA RDFWLLRYTS VMEDGSLVVC ERSLNNTQNG 300 PSMPPVQHFV RAEMLPSGYL IRPCEGGGSI IHIVDHMDLE PWSVPEVLRP LYESSTLLAQ 360 RTTLAALRQL RQISQEVSQP SVTGWGRRPA ALRALSQRLS RGFNEAVNGF TDEGWSMIES 420 DGIDDVTVHV NSSPGKLMGT ILTYANGFPS MSNAVLCAKA SMLLQNVPPA ILLRFLREHR 480 SEWADSGIDA YSAAAVKAGP CSLPVSRVGC FGGQVILPLA HTIENEEFME VIRLENMAQY 540 RDDMIMPSDI FLLQVCNGVD ESAVGTCAEL IFAPIDASFS DDAPLLPSGF RIIPLDSKTD 600 ASTPNRTLDL ASTLEVGPTG NRSPGDHSRN AGTAKSVMTI AFQFAFEIHL QESVTAMARQ 660 YIRSIISSVQ RVALALSPSR LGPHASLRPP PGTPEAQTLA RWICQSYRFF LGVELLKTPT 720 EGSDSVLKTL WHHSDAVMCC SLKALPVFTF ANQAGLDMLE TTLVALQDIT LEKIFNDNGK 780 KTLFAELPQI MQQGFACLQG GICLSSMGRP ISYERAVAWK VLNEEEDAHC LCFMFINWSF 840 V

Sequence ? help Back to Top

Protein Sequence Length: 841 aa Download sequence Send to blast

MMAVTSACKD SSKMGVDNGK YVRYTPEQVE ALERLYHECP KPSSLRRQQL IRECPILSNI  60
EPKQIKVWFQ NRRCREKQRK EASRLQAVNR KLTAMNKLLM EENDRLQKQV SQLVYENSYF  120
RQQTQNTTLA TTDNSCESVV TSGQHHLTPQ HPPRDASPAG LLSIAEETLT EFLSKATGTA  180
VEWVQMPGMK PGPDSIGIIA ISHGCTGVAS RACGLVGLEP TRVAEILKDR PSWYRDCRAV  240
DVLNVLSTGS GGTVELLYMQ LYAPTTLAPA RDFWLLRYTS VMEDGSLVVC ERSLNNTQNG  300
PSMPPVQHFV RAEMLPSGYL IRPCEGGGSI IHIVDHMDLE PWSVPEVLRP LYESSTLLAQ  360
RTTLAALRQL RQISQEVSQP SVTGWGRRPA ALRALSQRLS RGFNEAVNGF TDEGWSMIES  420
DGIDDVTVHV NSSPGKLMGT ILTYANGFPS MSNAVLCAKA SMLLQNVPPA ILLRFLREHR  480
SEWADSGIDA YSAAAVKAGP CSLPVSRVGC FGGQVILPLA HTIENEEFME VIRLENMAQY  540
RDDMIMPSDI FLLQVCNGVD ESAVGTCAEL IFAPIDASFS DDAPLLPSGF RIIPLDSKTD  600
ASTPNRTLDL ASTLEVGPTG NRSPGDHSRN AGTAKSVMTI AFQFAFEIHL QESVTAMARQ  660
YIRSIISSVQ RVALALSPSR LGPHASLRPP PGTPEAQTLA RWICQSYRFF LGVELLKTPT  720
EGSDSVLKTL WHHSDAVMCC SLKALPVFTF ANQAGLDMLE TTLVALQDIT LEKIFNDNGK  780
KTLFAELPQI MQQGFACLQG GICLSSMGRP ISYERAVAWK VLNEEEDAHC LCFMFINWSF  840
V

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011081776.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011081776.1	0.0	homeobox-leucine zipper protein ATHB-15
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A4D9B785	0.0	A0A4D9B785_SALSN; Homeobox-leucine zipper protein
STRING	Migut.A00196.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA457	24	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]