PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011081722.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 366aa    MW: 40705.9 Da    PI: 8.0651
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011081722.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.5e-08134154526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++ G Ck+Gd C +aHg
  XP_011081722.1 134 ACPDFRK-GSCKRGDACEYAHG 154
                     6******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.4E-5129155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.526130156IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-5134156IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-6134154IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.155164188IPR000571Zinc finger, CCCH-type
SMARTSM0035616164187IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MMMIGDPPRS NPTVEIPSWD YHYFEDPTAY IHSPITHNVA ASSPDASHYE NALAALQRYL  60
PSNKDDIVQA GDEDSDDFDV PVDAFSCDNF RMFEFKVKKC ARARSHDWTE CPFAHPGEKA  120
RRRDPRKYHY SGNACPDFRK GSCKRGDACE YAHGVFECWL HPARYRTQPC KDGTHCRRRV  180
CFFAHTPEQL RVLPYSPEAS PGRTHDSFMS IGSSPKSTLY SPPLSPTSGS PPLSPGGSLS  240
LGRLTESMRG LQLNKMKMGL GMGLSMSPPS WGLGFGSPRS PSGVRPGFMS LPTTPIRAVT  300
RPTLNPFDSW ETSCKEEPVM ERVESGRALR EKIYAKLGRE NSLDRVGRVE SAGAVPDVGW  360
VSELLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011081722.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081722.10.0zinc finger CCCH domain-containing protein 23
SwissprotQ9M0G21e-118C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A2G9HH400.0A0A2G9HH40_9LAMI; CCCH-type Zn-finger protein
STRINGMigut.A00165.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.12e-99C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]