PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

C2H2

Protein Properties

Length: 519aa MW: 56877.9 Da PI: 8.8363

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011081678.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	92	114	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_011081678.1 92 FVCEICNKGFQRDQNLQLHRRGH 114 89*******************88 PP
2	zf-C2H2	12.4	0.00047	169	191	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + XP_011081678.1 169 WKCEKCSKRYAVQSDWKAHSKIC 191 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.7E-5	91	114	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.32E-7	91	114	No hit	No description
PROSITE profile	PS50157	10.949	92	114	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	92	114	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	8.3E-5	92	114	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	94	114	IPR007087	Zinc finger, C2H2
SMART	SM00355	87	134	164	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.5E-5	157	190	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.32E-7	164	189	No hit	No description
SMART	SM00355	130	169	189	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence Send to blast
MLQGTGTVVE DSMSNLTSAI SNEASISSIN NRNEMGTSTN MYPHQQHLQS FASPNNPTQP 60 APKKKRNLPG NPDPEAEVVA LSPRTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL 120 KQRNNKEVVR KKVYVCPEPS CVHHDPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKRYAV 180 QSDWKAHSKI CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AEESSRSMTQ NPLLMSTQTV 240 PNNQAHQIHG FHHPLVPLKQ ENPQNFNQLP PWLSSEQPGA GGPGPPINPL FSSSPRLQHP 300 VQENPNPNSI SISTTTLSSS SSSLMSATAL LQKAAQMGVA MSTKMPSQSS DDQSILIRPH 360 HHVGAPGFCA TSSTTTAGLP SREEMGTAAF VHGLASFGNK IVNLPGGCMD LQDMNMVASS 420 LPCSTTGGGF DGSTLGFEYS LNGILNPKSN IHSFQENAHL MSTVRKDGSG GGDGLTRDFL 480 GLRAFPHHRD FLNMAGLDQM GSSSYDHHDQ PQNRAPWQT

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence Send to blast

MLQGTGTVVE DSMSNLTSAI SNEASISSIN NRNEMGTSTN MYPHQQHLQS FASPNNPTQP  60
APKKKRNLPG NPDPEAEVVA LSPRTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL  120
KQRNNKEVVR KKVYVCPEPS CVHHDPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKRYAV  180
QSDWKAHSKI CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AEESSRSMTQ NPLLMSTQTV  240
PNNQAHQIHG FHHPLVPLKQ ENPQNFNQLP PWLSSEQPGA GGPGPPINPL FSSSPRLQHP  300
VQENPNPNSI SISTTTLSSS SSSLMSATAL LQKAAQMGVA MSTKMPSQSS DDQSILIRPH  360
HHVGAPGFCA TSSTTTAGLP SREEMGTAAF VHGLASFGNK IVNLPGGCMD LQDMNMVASS  420
LPCSTTGGGF DGSTLGFEYS LNGILNPKSN IHSFQENAHL MSTVRKDGSG GGDGLTRDFL  480
GLRAFPHHRD FLNMAGLDQM GSSSYDHHDQ PQNRAPWQT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-34	165	231	3	71	Zinc finger protein JACKDAW
5b3h_F	1e-34	165	231	3	71	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	131	KLKQRNNKEVVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011081678.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ028874	4e-56	KJ028874.1 Sesamum indicum clone TilSSR_75 microsatellite sesame_75 sequence.
GenBank	KJ035093	4e-56	KJ035093.1 Sesamum indicum clone TilSSR_6294 microsatellite sesame_6294 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011081677.1	0.0	protein indeterminate-domain 7 isoform X1
Swissprot	Q8H1F5	1e-127	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A2G9GNP5	0.0	A0A2G9GNP5_9LAMI; Ovo transcription factor
STRING	Migut.A00127.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-118	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]