![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011081677.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 519aa MW: 56877.9 Da PI: 8.8363 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.5e-05 | 92 | 114 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_011081677.1 92 FVCEICNKGFQRDQNLQLHRRGH 114 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00047 | 169 | 191 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + XP_011081677.1 169 WKCEKCSKRYAVQSDWKAHSKIC 191 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 91 | 114 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.32E-7 | 91 | 114 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 92 | 114 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 8.3E-5 | 92 | 114 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 87 | 134 | 164 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.5E-5 | 157 | 190 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.32E-7 | 164 | 189 | No hit | No description |
SMART | SM00355 | 130 | 169 | 189 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 519 aa Download sequence Send to blast |
MLQGTGTVVE DSMSNLTSAI SNEASISSIN NRNEMGTSTN MYPHQQHLQS FASPNNPTQP 60 APKKKRNLPG NPDPEAEVVA LSPRTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL 120 KQRNNKEVVR KKVYVCPEPS CVHHDPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKRYAV 180 QSDWKAHSKI CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AEESSRSMTQ NPLLMSTQTV 240 PNNQAHQIHG FHHPLVPLKQ ENPQNFNQLP PWLSSEQPGA GGPGPPINPL FSSSPRLQHP 300 VQENPNPNSI SISTTTLSSS SSSLMSATAL LQKAAQMGVA MSTKMPSQSS DDQSILIRPH 360 HHVGAPGFCA TSSTTTAGLP SREEMGTAAF VHGLASFGNK IVNLPGGCMD LQDMNMVASS 420 LPCSTTGGGF DGSTLGFEYS LNGILNPKSN IHSFQENAHL MSTVRKDGSG GGDGLTRDFL 480 GLRAFPHHRD FLNMAGLDQM GSSSYDHHDQ PQNRAPWQT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-34 | 165 | 231 | 3 | 71 | Zinc finger protein JACKDAW |
5b3h_F | 1e-34 | 165 | 231 | 3 | 71 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 118 | 131 | KLKQRNNKEVVRKK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00206 | DAP | Transfer from AT1G55110 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011081677.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ028874 | 4e-56 | KJ028874.1 Sesamum indicum clone TilSSR_75 microsatellite sesame_75 sequence. | |||
GenBank | KJ035093 | 4e-56 | KJ035093.1 Sesamum indicum clone TilSSR_6294 microsatellite sesame_6294 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011081677.1 | 0.0 | protein indeterminate-domain 7 isoform X1 | ||||
Swissprot | Q8H1F5 | 1e-127 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | A0A2G9GNP5 | 0.0 | A0A2G9GNP5_9LAMI; Ovo transcription factor | ||||
STRING | Migut.A00127.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G55110.1 | 1e-118 | indeterminate(ID)-domain 7 |
Publications ? help Back to Top | |||
---|---|---|---|
|