PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011081622.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 372aa MW: 41248.3 Da PI: 7.1032

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011081622.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.2	1.4e-08	284	324	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rrRR+ri +++ L++l+P +K++ a++L +A +Y+k L XP_011081622.1 284 ARRRRERISERIRVLQRLVPGG-----TKMDTASMLDEAANYLKFL 324 69****************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.173	275	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.33E-14	280	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.4E-13	281	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-12	283	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.6E-6	284	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MDGLGWSNQQ HELEESFIVS NSNCKGKMEI MSTETSDPIQ RQAREIDFFP GVFSQWNARS 60 EGTSACSLFN GLILDSGTTC GQGNYQHMVR AGTTDLDSFN SVEYQTGTAS VEDDGISMIF 120 SGCKKLWDFT EGTVKSVPLI MSVSKAVDME GNSPTSGKQA IIDSGSDDYE PHATKRRRAE 180 SQKMQIKPQN LDFLHSNDSA TAEGSRFKKP RLDKGTITSS NINFEQTCSL ASSADEPGHG 240 AVSQMKELIY RAAVFRPVNF VTEIMEKPKR KNVKFSNDPQ TVAARRRRER ISERIRVLQR 300 LVPGGTKMDT ASMLDEAANY LKFLKSQTKA LESLEQKTNG TVNDFLPNAN LVLSPFINNY 360 ILTLNPPHLS KS

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MDGLGWSNQQ HELEESFIVS NSNCKGKMEI MSTETSDPIQ RQAREIDFFP GVFSQWNARS  60
EGTSACSLFN GLILDSGTTC GQGNYQHMVR AGTTDLDSFN SVEYQTGTAS VEDDGISMIF  120
SGCKKLWDFT EGTVKSVPLI MSVSKAVDME GNSPTSGKQA IIDSGSDDYE PHATKRRRAE  180
SQKMQIKPQN LDFLHSNDSA TAEGSRFKKP RLDKGTITSS NINFEQTCSL ASSADEPGHG  240
AVSQMKELIY RAAVFRPVNF VTEIMEKPKR KNVKFSNDPQ TVAARRRRER ISERIRVLQR  300
LVPGGTKMDT ASMLDEAANY LKFLKSQTKA LESLEQKTNG TVNDFLPNAN LVLSPFINNY  360
ILTLNPPHLS KS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	268	287	KRKNVKFSNDPQTVAARRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011081622.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011081622.1	0.0	transcription factor bHLH87-like
Swissprot	Q8S3D2	1e-59	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A2Z7C703	6e-79	A0A2Z7C703_9LAMI; Uncharacterized protein
STRING	Bo5g101160.1	3e-60	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4350	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-52	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]