PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011081420.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NAC
Protein Properties Length: 361aa    MW: 40867.2 Da    PI: 6.6128
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011081420.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.11.5e-52151431128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi++vd++k+ePwd+++k+k     +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk +
  XP_011081420.1  15 VPPGFRFHPTEEELLHYYLRKKVAYEKIDL-DVIRDVDLNKLEPWDIQEKCKIgstPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVI 108
                     69****************************.9***************964444222455************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +s +g+ +g++ktLvfy+grap+g+k+dW+mheyrl
  XP_011081420.1 109 YS-NGRRIGMRKTLVFYRGRAPHGQKSDWIMHEYRL 143
                     **.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5911175IPR003441NAC domain
PROSITE profilePS5100557.22615175IPR003441NAC domain
PfamPF023652.2E-2716143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSDNMNLSVN GRSQVPPGFR FHPTEEELLH YYLRKKVAYE KIDLDVIRDV DLNKLEPWDI  60
QEKCKIGSTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKVIYS NGRRIGMRKT  120
LVFYRGRAPH GQKSDWIMHE YRLDDNTHDS AHGPSIAGDS TGPEEGWVVC RVFKKKNYHK  180
TSPELPLITS SISRTSNLPR NDGVLDQILM YMGRSSSSSC KQESHDQSRN DENLLEFPNP  240
AADFAHLPGL ESPPLDPSYK SPGPDDMVTD IGPSSADWVA LDRLVASQLN GQCSKQFSSF  300
NNEDFCFSFE HDEMQLVNMH SSHDHRPNHQ ISSSDADFWS FARSSSSLSS SSSDPLSHLS  360
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-481517717167NO APICAL MERISTEM PROTEIN
1ut4_B1e-481517717167NO APICAL MERISTEM PROTEIN
1ut7_A1e-481517717167NO APICAL MERISTEM PROTEIN
1ut7_B1e-481517717167NO APICAL MERISTEM PROTEIN
3swm_A2e-481517720170NAC domain-containing protein 19
3swm_B2e-481517720170NAC domain-containing protein 19
3swm_C2e-481517720170NAC domain-containing protein 19
3swm_D2e-481517720170NAC domain-containing protein 19
3swp_A2e-481517720170NAC domain-containing protein 19
3swp_B2e-481517720170NAC domain-containing protein 19
3swp_C2e-481517720170NAC domain-containing protein 19
3swp_D2e-481517720170NAC domain-containing protein 19
4dul_A1e-481517717167NAC domain-containing protein 19
4dul_B1e-481517717167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011081420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081420.20.0NAC domain-containing protein 12
SwissprotQ84WP61e-118NAC43_ARATH; NAC domain-containing protein 43
TrEMBLA0A2G9FWY81e-160A0A2G9FWY8_9LAMI; Uncharacterized protein
STRINGEOY238671e-144(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.11e-110NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  3. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  7. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]