PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011081404.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 203aa MW: 23364.5 Da PI: 10.1004 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.3 | 1e-19 | 30 | 77 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed +l+++v+ +G+++Wk++a + g++R++k+c++rw++yl XP_011081404.1 30 RGAWTADEDAKLAQYVEIHGPKRWKSVAVKSGLNRCGKSCRLRWLNYL 77 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 37.8 | 4.6e-12 | 83 | 129 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqky 47 rg+ + E++l+++++++ g +W++Iar+++ gRt++++k++w+ + XP_011081404.1 83 RGNISDAEEDLILRLHRLQEIGkRWSLIARRLP-GRTDNEIKNYWNAH 129 678889999999999975544445*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.758 | 25 | 81 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.46E-26 | 28 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-15 | 29 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-18 | 30 | 77 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-23 | 31 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.06E-10 | 32 | 77 | No hit | No description |
SMART | SM00717 | 2.2E-10 | 82 | 132 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 15.412 | 83 | 134 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.9E-10 | 83 | 130 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-21 | 85 | 133 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.25E-8 | 87 | 130 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MHKRTRKRRH VGMAKRIGGA NGGKRSDLNR GAWTADEDAK LAQYVEIHGP KRWKSVAVKS 60 GLNRCGKSCR LRWLNYLRPD IMRGNISDAE EDLILRLHRL QEIGKRWSLI ARRLPGRTDN 120 EIKNYWNAHL RKKANLMEKL PATSIAVVGK NWKDNEGMSS VKETEASGDD ENGVRDDEVF 180 DFSTQETYGL EWVKTFLELE EDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-26 | 26 | 134 | 23 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011081404.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF059390 | 2e-40 | KF059390.1 Salvia miltiorrhiza MYB-related transcription factor (MYB36) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011081404.2 | 1e-148 | transcription factor WER-like | ||||
TrEMBL | A0A2G9HQZ3 | 2e-80 | A0A2G9HQZ3_9LAMI; Uncharacterized protein | ||||
STRING | XP_010258843.1 | 7e-75 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40330.1 | 1e-48 | myb domain protein 23 |