PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011080947.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 638aa    MW: 70841.5 Da    PI: 5.1226
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011080947.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.3e-14438485355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+h   Er+RR++iN++f  L +l+P+      +K++K++iL +++eY+++L+
  XP_011080947.1 438 RNHVLSERKRREKINERFTILGSLVPSG-----GKVDKVSILDHTIEYLRELE 485
                     579999********************98.....8****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.7E-5619202IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.698435484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-18438501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.38E-12438480No hitNo description
PfamPF000101.7E-11438485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-18439497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-17441490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MATANQNQIQ IPEEVPQNLR KRLALAVRTI QWSYAIFWSI SSRQPGVLEW GDGYYNGDIK  60
TRKTVQAAEV NADQLGLQRS DQLRELYESL SLGETSPQAK RPTAALSPED LTDAEWYFLV  120
CMSFVFNVDQ GLPGRTLAKN QTIWLCNAHR ADTKVFSRSL LAKSAAIQTI VCFPHLGGVV  180
ELGTTELVAE DLDLIQHIKT SFLDSPSVTV PVPNITNHVS NNIVSNNGLN CEMPDCANMP  240
EDGLDQFLDC PDMDNCSPND CSNDFADNLL REESNLVEVA DGEQSWPFMD DAISCLNNSM  300
NSSDCVSHTY EDPETPLPLS DGKRETNSCI RETQECNQNN TSGLQGNDVH YQTVLSNLLK  360
SSHQLILGPY FGKGSGGSSF ISWRKDGTSG APVPQSGTTS QRLLKKVLLE VARMHENCRL  420
ESVKNNGNSK PEVEEVDRNH VLSERKRREK INERFTILGS LVPSGGKVDK VSILDHTIEY  480
LRELERRVEE LESYKEAAEL GSSTQSKPLD AIERTSDNYG PSKNGSTKKP SMNKRKASEM  540
EKTGGETNRA RLRDSSTDNL TVTIADKDVL IEMRCFWREC VLLEVMEAIS KLHLDTQSAQ  600
SSIDDGILSM TLKAKCKGLK TASASVIRQA LQRVVRKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-17122022192Transcription factor MYC3
4rqw_B2e-17122022192Transcription factor MYC3
4rs9_A2e-17122022192Transcription factor MYC3
4yz6_A2e-17122022192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1443448ERKRRE
2444449RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011080947.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080947.10.0transcription factor EGL1 isoform X1
TrEMBLQ387360.0Q38736_ANTMA; DEL
STRINGMigut.E01090.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45762435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-167bHLH family protein