PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011080516.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HD-ZIP
Protein Properties Length: 845aa    MW: 92378.6 Da    PI: 6.3128
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011080516.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.7e-192583357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_011080516.1 25 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83
                    5679*****************************************************97 PP
2START178.83.1e-561703782205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g+++l 
  XP_011080516.1 170 VAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRSVDILNVLPTAngGTVELL 263
                     799*******************************************************.8888888888****************9999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf+ +Ry+  + +g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h++l++++++++lr+l+
  XP_011080516.1 264 YMQLYAPTTLAPgRDFWLLRYTSVMDDGSLVVCERSLSNTQNGPSmppVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMNLEAWSVPEVLRPLY 358
                     *******************************************9988899********************************************* PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s++a ++kt++a+l+++++
  XP_011080516.1 359 ESSTALAQKTTMAALRQLRQ 378
                     ****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.9532084IPR001356Homeobox domain
SMARTSM003895.3E-162288IPR001356Homeobox domain
CDDcd000865.71E-172585No hitNo description
SuperFamilySSF466895.99E-172587IPR009057Homeodomain-like
PfamPF000461.1E-162683IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-182783IPR009057Homeodomain-like
CDDcd146865.08E-677116No hitNo description
PROSITE profilePS5084825.927160375IPR002913START domain
CDDcd088752.48E-77164380No hitNo description
SMARTSM002341.9E-42169379IPR002913START domain
SuperFamilySSF559611.92E-38170381No hitNo description
PfamPF018521.4E-53170378IPR002913START domain
Gene3DG3DSA:3.30.530.201.3E-24170376IPR023393START-like domain
PfamPF086706.5E-50702844IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MAMSCKDSNK AAAAAAAAAS MDNGKYVRYT PEQVEALERL YHECPKPSSM RRQQLIRECP  60
ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QGVNRKLTAM NKLLMEENDR LQKQVSQLVY  120
ENGYFRQHAP SNALATKDTS CESVVTSGQQ HHLTPQHPPR DASPAGLLSV AEETLTEFLS  180
KATGTAVEWV QMPGMKPGPD SIGIVAISHG CTGVAARACG LVGLEPTRVA EILKDRPSWF  240
RDCRSVDILN VLPTANGGTV ELLYMQLYAP TTLAPGRDFW LLRYTSVMDD GSLVVCERSL  300
SNTQNGPSMP PVQNFVRAEM LPSGYLIRPC EGGGSIIHIV DHMNLEAWSV PEVLRPLYES  360
STALAQKTTM AALRQLRQIA QEISQSNVGN WGRRPAALRA LSHRLSRGFN EALNGLSDEG  420
WSLIANDGID DVTVLVNSNP EKLMGLNISF ANGYASVCNA VLCAKASMLL QNVPPAILVR  480
FLREHRSEWA DSSIDAYSAA AVKVGPNTLL GARVGNFGGQ VILPLAQTIE QEELLEVIKL  540
EGVAHSPEDA MMPRDIFLLQ LCGGMDETAV GTCAELIFAP IDASFADDAP LLPSGFRIIP  600
LDSSKEASSP NRTLDLASAL ESGTAGNKPS NDLAVTSCTT RSVMTIAFQF AFESHMQENV  660
ASMARQYLRS IISSVQRVAL ALSPSHPGSG LRSPLGTPEA HTLARWICQS YRSYMGVELL  720
KSSGEGSESI LKALWQYSDA ILCCSVKAMP VFTFANQAGL DMLETTLVAL QDISLEKIFD  780
DHGRKNLCSE FPQIMQQGFG TLQGGICLSS MSRPISYERA VAWKVLNEDD NAHCLCFMFI  840
NWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011080516.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080516.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A1V0JHU30.0A0A1V0JHU3_SESIN; Homeobox-leucine zipper protein ATHB-15
STRINGcassava4.1_001674m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]