PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011080470.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 417aa    MW: 45126.1 Da    PI: 9.6598
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011080470.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000291840123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + Cp C+ksF +   L  H r+H
  XP_011080470.1 18 FACPVCSKSFASGKALGGHKRVH 40
                    78*****************9997 PP
2zf-C2H218.36.3e-066890123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + Cp C+ksF +  +L+ H+r H
  XP_011080470.1 68 FNCPVCPKSFVSDKSLHGHMRAH 90
                    78*******************99 PP
3zf-C2H214.50.0001353375123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp C+k Fs++  L  H r +
  XP_011080470.1 353 HRCPFCDKIFSTSRVLIDHRRQC 375
                     79******************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.6E-41741IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.8E-91841IPR007087Zinc finger, C2H2
SuperFamilySSF576675.27E-91890No hitNo description
SMARTSM003550.0281840IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.3411847IPR007087Zinc finger, C2H2
PROSITE patternPS0002802042IPR007087Zinc finger, C2H2
PfamPF139121.1E-56892IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-46890IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00366890IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6586895IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SuperFamilySSF576675.59E-5291319No hitNo description
PfamPF139122.0E-9294316IPR007087Zinc finger, C2H2
PROSITE profilePS501579.016294321IPR007087Zinc finger, C2H2
SMARTSM003552294316IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280296316IPR007087Zinc finger, C2H2
SMARTSM0035510353373IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.2E-4353377IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.078353380IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MEKLIIKIKI PRADELQFAC PVCSKSFASG KALGGHKRVH MHKGKKSSNQ RRELQIADGE  60
AGNRVNSFNC PVCPKSFVSD KSLHGHMRAH PERNWRGMKP PNPGVENGCN SSLVPVSGPA  120
VALLGNGSEG DKELGSDVPL LEWPQSARRS RHGKAPMNIP ADPDYQEQSV CGAYDLMALA  180
NGEPRRQDLA PKKKRLELAI STGAGSSGDS SRNKKAIVLG GDLSLQKRDM ITNPGLESSV  240
RGKAIVLGGG LSVGNRDKIP NPGPESSTRR EGSSSVNSNV NARNKVSVKA QKQYICSICY  300
RSFRSYHALG GHKAHHITKD AKVRYSVGID NGSTAAGPVV PYIGQPQGCS SEHRCPFCDK  360
IFSTSRVLID HRRQCTGPTE PINEVLHPGG EETRNLSIVV HKFDLNELPP EWTDADC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011080470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080470.10.0uncharacterized protein LOC105163724
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.18e-15C2H2 family protein