PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011080466.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 324aa    MW: 36439.4 Da    PI: 4.83
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011080466.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-13151197354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r h ++Er+RR++i + f  L +l+P       kKl+Ka+iLe A++YIk L
  XP_011080466.1 151 REHLAAERKRREKIGQLFVALSKLVPGI-----KKLDKASILEDAIDYIKIL 197
                     5699**********************97.....7***************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.488148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-11151197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-16152210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-17152208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.49E-13153202No hitNo description
SMARTSM003534.2E-15154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEGNCDDMFG VEAADIPHEI YTSRSRPYCM DQLMVSRQTM ITTDPSSSSS ASSSSSYSSA  60
FPRQAIYFEN KNPTSSVLLM QESDFKTPNF EFSPNGTANL SSTILSFSSP LLIKDDSVDN  120
VNQYDDLALW RISPKRDQRS GVPVRNPLQA REHLAAERKR REKIGQLFVA LSKLVPGIKK  180
LDKASILEDA IDYIKILEEQ IRVLEVEQVE KRSEDIDNST SKESSNIIDD STNELSAASP  240
IKVRISDNNV LINILCKKQK GFMSRIHMEM EKMNLCAVDV RVMPFGRDAL DITILAQMQS  300
ELCVTVKDIV DQLDMAFLNP PHMQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161ERKRRE
2157162RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011080466.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0603435e-54KJ060343.1 Sesamum indicum clone TilSSR_31544 microsatellite Sesame_31544 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080466.20.0transcription factor bHLH19-like
TrEMBLA0A2G9HXX11e-60A0A2G9HXX1_9LAMI; Uncharacterized protein
STRINGXP_009607937.15e-52(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88641628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-40bHLH family protein