PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011080349.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | NF-YA | ||||||||
Protein Properties | Length: 316aa MW: 34656.2 Da PI: 9.5032 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103.4 | 2.1e-32 | 166 | 222 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh+hAlrR+Rg+gGrF XP_011080349.1 166 QEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKVRKPYLHESRHQHALRRARGTGGRF 222 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.1E-35 | 164 | 225 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.117 | 165 | 225 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.5E-27 | 167 | 222 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.8E-24 | 168 | 190 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 170 | 190 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.8E-24 | 199 | 222 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MQSKSKSVHQ GEAAGLYNVA NSTSDPWWNN TGYNSFSPAM MRGNASDSSS LEQSVDGQSQ 60 SEGGINEEDD DTTKKSPTGT PLQPDRRYGR EGPKLQQVPP TLHPRNDGNF THAPQLELVG 120 HSVACGSNPY DQYYGGMMAA YAQSLVPPYL HDMHHARMPL PLEMAQEPVY VNAKQYHGIL 180 RRRQSRAKAE LEKKLIKVRK PYLHESRHQH ALRRARGTGG RFAKKSDSDT SKGTDSGSAI 240 MSQSISSSGS GPFLSDSSGA KVPDAQDLYN SDIGNFRNQT NWQVQANQRR SAETGEGPTS 300 SQKWGNIPPN RALAMP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-21 | 166 | 240 | 2 | 76 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011080349.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080345.1 | 0.0 | nuclear transcription factor Y subunit A-1-like | ||||
Refseq | XP_011080346.1 | 0.0 | nuclear transcription factor Y subunit A-1-like | ||||
Refseq | XP_011080347.1 | 0.0 | nuclear transcription factor Y subunit A-1-like | ||||
Refseq | XP_011080348.1 | 0.0 | nuclear transcription factor Y subunit A-1-like | ||||
Refseq | XP_011080349.1 | 0.0 | nuclear transcription factor Y subunit A-1-like | ||||
Refseq | XP_011080350.1 | 0.0 | nuclear transcription factor Y subunit A-1-like | ||||
Refseq | XP_020550734.1 | 0.0 | nuclear transcription factor Y subunit A-1-like | ||||
Refseq | XP_020550735.1 | 0.0 | nuclear transcription factor Y subunit A-1-like | ||||
Swissprot | Q9LXV5 | 7e-55 | NFYA1_ARATH; Nuclear transcription factor Y subunit A-1 | ||||
TrEMBL | A5PGU3 | 1e-152 | A5PGU3_ANTMA; YA4 | ||||
STRING | Migut.N02320.1.p | 1e-127 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.3 | 1e-53 | nuclear factor Y, subunit A1 |
Publications ? help Back to Top | |||
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