PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011080160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | B3 | ||||||||
Protein Properties | Length: 741aa MW: 81926.2 Da PI: 5.1807 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.6 | 5.6e-19 | 604 | 701 | 2 | 96 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 +kvl++sd +++gr+vlpkk ae+h +++++ ++ + +ed ++r+W++++++ ++ks++y+l+ ++ +Fv+ ngL+egDf++++ ++ +++ XP_011080160.1 604 QKVLKQSDIGNLGRIVLPKKEAESHlpELESRDGISIAMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVRVNGLQEGDFIIIY--SDtKCG 695 79*************************999999********7778*******99777777777777.********************..444999 PP ..EEEE CS B3 91 elvvkv 96 +++++ XP_011080160.1 696 KYMIRG 701 888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-26 | 597 | 706 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 2.19E-34 | 601 | 702 | No hit | No description |
SuperFamily | SSF101936 | 7.46E-22 | 602 | 698 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.0E-19 | 603 | 705 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.588 | 603 | 705 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-15 | 604 | 700 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 741 aa Download sequence Send to blast |
MIKDEAVEQD LHFAAGNVEV KIEDMAAAVA ADGGVANPAG FDPMEEDHQA VVMATIGEKD 60 LWLDRDQEHL LDVNDASIFY NDFPPLPDFP CMSSSSSSSS TPAASKPMAP SSSSSSAASS 120 SPAASWAVMK SDAEEDTGRM SFQQTTDVEE VKVEPAALSS TASMEIPPPS EHDGLGDVDC 180 IDVMENFGYM DLIDTNEIWD PSSVFQSENP QEFLEDQQTA APLLLEGSSP QDPKMQCQDE 240 NDGFSFLQGN SELAMIFFEW LKQNKDYISA EDMRSIKLKR STIESASKRL GSTKEGKKQL 300 LKLILEWVEQ YQLQKKRMRE SGLQSPYAYQ ETVQNSDPNP NPNPNPSFSY SPLPPDPNAC 360 FSSSPWMPPA PPPHASEVTA MVAAPPAFAP PMATGYGGDP YSNPIPVAPM NHQVVNGIPY 420 PHAAEYPVME HAQSWVISPF PMQQPHQFSH FPDNGNMITH QQALYGHPYQ IFDPNGERLM 480 RLGSSATKEA RKKRMARQRR LYSHHHRHSS NSNQHQNQMN DAHVVGEASE DGDQAGSPGN 540 WVYWSPSGAG SSPTPGSGPP ADASQAHSGD RAPVQQQNYQ RQSSSDRRQQ QGWKTEKNLK 600 FLLQKVLKQS DIGNLGRIVL PKKEAESHLP ELESRDGISI AMEDIGTSRV WNMRYRFWPN 660 NKSRMYLLEN TGDFVRVNGL QEGDFIIIYS DTKCGKYMIR GVKVRQPGGK LEGKKPARRN 720 MRNLSLAGNS SSLAPIKQAV R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 4e-36 | 599 | 703 | 1 | 105 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 4e-36 | 599 | 703 | 1 | 105 | B3 domain-containing transcription factor FUS3 |
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011080160.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080160.1 | 0.0 | B3 domain-containing transcription factor ABI3 isoform X1 | ||||
TrEMBL | A0A2G9IAV3 | 0.0 | A0A2G9IAV3_9LAMI; Uncharacterized protein | ||||
STRING | Migut.D00511.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4270 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 2e-76 | B3 family protein |