PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011080160.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family B3
Protein Properties Length: 741aa    MW: 81926.2 Da    PI: 5.1807
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011080160.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.65.6e-19604701296
                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                     +kvl++sd +++gr+vlpkk ae+h  +++++ ++ + +ed  ++r+W++++++  ++ks++y+l+ ++ +Fv+ ngL+egDf++++  ++ +++
  XP_011080160.1 604 QKVLKQSDIGNLGRIVLPKKEAESHlpELESRDGISIAMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVRVNGLQEGDFIIIY--SDtKCG 695
                     79*************************999999********7778*******99777777777777.********************..444999 PP

                     ..EEEE CS
              B3  91 elvvkv 96 
                     +++++ 
  XP_011080160.1 696 KYMIRG 701
                     888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-26597706IPR015300DNA-binding pseudobarrel domain
CDDcd100152.19E-34601702No hitNo description
SuperFamilySSF1019367.46E-22602698IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.0E-19603705IPR003340B3 DNA binding domain
PROSITE profilePS5086310.588603705IPR003340B3 DNA binding domain
PfamPF023624.5E-15604700IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MIKDEAVEQD LHFAAGNVEV KIEDMAAAVA ADGGVANPAG FDPMEEDHQA VVMATIGEKD  60
LWLDRDQEHL LDVNDASIFY NDFPPLPDFP CMSSSSSSSS TPAASKPMAP SSSSSSAASS  120
SPAASWAVMK SDAEEDTGRM SFQQTTDVEE VKVEPAALSS TASMEIPPPS EHDGLGDVDC  180
IDVMENFGYM DLIDTNEIWD PSSVFQSENP QEFLEDQQTA APLLLEGSSP QDPKMQCQDE  240
NDGFSFLQGN SELAMIFFEW LKQNKDYISA EDMRSIKLKR STIESASKRL GSTKEGKKQL  300
LKLILEWVEQ YQLQKKRMRE SGLQSPYAYQ ETVQNSDPNP NPNPNPSFSY SPLPPDPNAC  360
FSSSPWMPPA PPPHASEVTA MVAAPPAFAP PMATGYGGDP YSNPIPVAPM NHQVVNGIPY  420
PHAAEYPVME HAQSWVISPF PMQQPHQFSH FPDNGNMITH QQALYGHPYQ IFDPNGERLM  480
RLGSSATKEA RKKRMARQRR LYSHHHRHSS NSNQHQNQMN DAHVVGEASE DGDQAGSPGN  540
WVYWSPSGAG SSPTPGSGPP ADASQAHSGD RAPVQQQNYQ RQSSSDRRQQ QGWKTEKNLK  600
FLLQKVLKQS DIGNLGRIVL PKKEAESHLP ELESRDGISI AMEDIGTSRV WNMRYRFWPN  660
NKSRMYLLEN TGDFVRVNGL QEGDFIIIYS DTKCGKYMIR GVKVRQPGGK LEGKKPARRN  720
MRNLSLAGNS SSLAPIKQAV R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A4e-365997031105B3 domain-containing transcription factor FUS3
6j9b_D4e-365997031105B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011080160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080160.10.0B3 domain-containing transcription factor ABI3 isoform X1
TrEMBLA0A2G9IAV30.0A0A2G9IAV3_9LAMI; Uncharacterized protein
STRINGMigut.D00511.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42702339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.12e-76B3 family protein