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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011080062.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | NAC | ||||||||
Protein Properties | Length: 290aa MW: 33064.8 Da PI: 6.5544 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.2 | 9.9e-51 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF P+d+elv++yL kk+++++++ ++ e+d++++ePw+Lp +k +++ewyfFs rd+kyatg r+nrat+sgyWkatgkd++vl+ XP_011080062.1 10 LPPGFRFYPSDDELVCHYLYKKIANEQVHR-GTLVEIDLHTCEPWQLPDVAKLNSNEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRAVLDP 103 79*************************999.78***************87778899**************************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++++vg++ktLvfyk+rap+g kt W+mhe+rle XP_011080062.1 104 rSRAVVGMRKTLVFYKNRAPNGIKTGWIMHEFRLE 138 56677***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.36E-61 | 9 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.676 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-27 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MGLREIGETL PPGFRFYPSD DELVCHYLYK KIANEQVHRG TLVEIDLHTC EPWQLPDVAK 60 LNSNEWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRAV LDPRSRAVVG MRKTLVFYKN 120 RAPNGIKTGW IMHEFRLENP NVPPKEDWVL CRVFHKSRSS SSSDHHHHQN SKESSIIPHS 180 TDLYADSTAV ATSPNLAASP TNNDIQHAYQ NIITSFFHTQ NPSTSLGLTS SPLDHPAAYL 240 HDCMQPAQNR MVLEAKCEDD YGFLFDFDAS NGVPSSLEDM GFDDDHHHDM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-48 | 1 | 160 | 4 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-48 | 1 | 160 | 4 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-48 | 1 | 160 | 4 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-48 | 1 | 160 | 4 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-48 | 1 | 160 | 7 | 172 | NAC domain-containing protein 19 |
3swm_B | 2e-48 | 1 | 160 | 7 | 172 | NAC domain-containing protein 19 |
3swm_C | 2e-48 | 1 | 160 | 7 | 172 | NAC domain-containing protein 19 |
3swm_D | 2e-48 | 1 | 160 | 7 | 172 | NAC domain-containing protein 19 |
3swp_A | 2e-48 | 1 | 160 | 7 | 172 | NAC domain-containing protein 19 |
3swp_B | 2e-48 | 1 | 160 | 7 | 172 | NAC domain-containing protein 19 |
3swp_C | 2e-48 | 1 | 160 | 7 | 172 | NAC domain-containing protein 19 |
3swp_D | 2e-48 | 1 | 160 | 7 | 172 | NAC domain-containing protein 19 |
4dul_A | 2e-48 | 1 | 160 | 4 | 169 | NAC domain-containing protein 19 |
4dul_B | 2e-48 | 1 | 160 | 4 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011080062.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ047352 | 2e-56 | KJ047352.1 Sesamum indicum clone TilSSR_18553 microsatellite Sesame_18553 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080062.1 | 0.0 | protein CUP-SHAPED COTYLEDON 3 | ||||
Swissprot | Q84TE6 | 3e-61 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A2G9HEI9 | 1e-142 | A0A2G9HEI9_9LAMI; Uncharacterized protein | ||||
STRING | Migut.D00437.1.p | 1e-117 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1882 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 5e-90 | NAC domain containing protein 74 |