PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011080001.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family WRKY
Protein Properties Length: 345aa    MW: 38846.8 Da    PI: 9.9645
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011080001.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.61.9e-31279336359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  XP_011080001.1 279 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 336
                     9************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.3E-18230275IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.2E-33265337IPR003657WRKY domain
PROSITE profilePS5081129.884272338IPR003657WRKY domain
SuperFamilySSF1182904.18E-27275337IPR003657WRKY domain
SMARTSM007749.4E-39277337IPR003657WRKY domain
PfamPF031062.4E-27279336IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEEVESANIA AVESCYRVIN LLSQPQDQNQ FRNLVEQTGE AVQNFKKVVS LLNSSCGHAR  60
VRRAKKFQTP FPQSIFLEKP IFRSDDQHPK THQLLQTTPL EGNQLQEVAS NVKSDLTLGN  120
PSFELSSHGK NPLQHVHQTP LPNYHFLHHQ RIQLQQQQQQ LKQQAELMYR RSNSGISLNF  180
DSSTCTPTMS STRSFISSLS IDGSVANLDG SSFHLIGAAR SADQSSFHHK RKCSGRGEEG  240
SVKCGVSGRC HCSKKRKHRV KRSIKVPAIS NKLADIPPDE YSWRKYGQKP IKGSPHPRGY  300
YKCSSMRGCP ARKHVERCLE EPSMLIVTYE GEHNHPRLPS QSANT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-202733391075WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011080001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080000.10.0probable WRKY transcription factor 21 isoform X1
SwissprotO043361e-131WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A2G9HEN80.0A0A2G9HEN8_9LAMI; Uncharacterized protein
STRINGXP_009618397.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-125WRKY DNA-binding protein 21