PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011079920.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 429aa    MW: 47490.7 Da    PI: 8.965
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011079920.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-0581103123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  XP_011079920.1  81 FVCEICNKGFQRDQNLQLHRRGH 103
                     89*******************88 PP
2zf-C2H212.40.00047157179123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H +t+
  XP_011079920.1 157 WKCEKCSKIYAVQSDWKAHSKTC 179
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-580103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.97E-680103No hitNo description
PfamPF121716.6E-581103IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94981103IPR007087Zinc finger, C2H2
SMARTSM003550.01781103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM00355260122152IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-4145178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.97E-6152177No hitNo description
SMARTSM00355170157177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MFPAVMPNST CVSEEPSSNM SSGPRVQDFG SLNSLMLQNS LSVPNQQPQK TKKKRNLPGN  60
PDPDAEVIAL SPKTLLATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRNSKENRKR  120
AYVCPEPTCL HHHPSRALGD LTGIKKHYCR KHGEKKWKCE KCSKIYAVQS DWKAHSKTCG  180
TREYRCDCGT LFSRKDSFVT HRAFCDALAE ESARLSAATN SIFLPNPNNF TTTTTQPFHF  240
NPPLPPPPSL LPFSSHHRHG FLRNPLDPPP QNLDPNSHSE NQAHIKHEAL HLIPTSSPLL  300
CQDFSPLCRN LHVSTSQLPP LSATALLQKA VSLGAVGHAG STMAHLDMHV ASAWQKSDDR  360
FTRDFLGLTG DQCGSSGNSG GSGNGNMKEV VSFRRGGVEF PVYEGGHNSV LKHHGLIGFT  420
ETCTDWGNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-37153220370Zinc finger protein JACKDAW
5b3h_F9e-37153220370Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011079920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079920.10.0protein indeterminate-domain 12
SwissprotO227591e-119IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A4D9A7Y81e-168A0A4D9A7Y8_SALSN; Uncharacterized protein
STRINGEOX946361e-157(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-104C2H2 family protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]