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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011079827.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 258aa MW: 29175.1 Da PI: 6.0387 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.1 | 2.8e-07 | 116 | 163 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+++ +++r RR ri ++++ L+el+P++ k + a L ++++++++L XP_011079827.1 116 REKAYAADRCRRLRISHWLDALQELVPHS-----KEVGRAGLLDEVIDHVQYL 163 888999**********************9.....6699999999999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.3E-9 | 111 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.55E-6 | 112 | 164 | No hit | No description |
SuperFamily | SSF47459 | 1.19E-9 | 113 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.915 | 114 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.9E-5 | 116 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.0E-5 | 120 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MNPGSNWIHP EPVPVPEWMH CPQTPQNYVD FLAERGYTEI QKQMSYDISS QVPSSRLADP 60 SHLEEYLRPH SEGNFIITCV QKQGWTEDCS SAFQAYSSSC AAESKYASGA RRKRSREKAY 120 AADRCRRLRI SHWLDALQEL VPHSKEVGRA GLLDEVIDHV QYLKYKVKDL CRSRLGGEST 180 SNSFIFLEGH GHYLVQEQML NGPLEEIMGK FIDVYPSAAT ELLQSRGLIV MPVNLVEGLC 240 DPMETLDIQE KGAVLISK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011079827.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011079827.1 | 0.0 | transcription factor bHLH66-like isoform X5 | ||||
TrEMBL | A0A0H3Y7N0 | 1e-100 | A0A0H3Y7N0_SALMI; Basic helix-loop-helix transcription factor | ||||
STRING | Migut.D00274.1.p | 1e-111 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 9e-21 | LJRHL1-like 1 |