PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011079826.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 296aa MW: 33380.8 Da PI: 5.5516

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011079826.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.8	3.5e-07	154	201	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+++ +++r RR ri ++++ L+el+P++ k + a L ++++++++L XP_011079826.1 154 REKAYAADRCRRLRISHWLDALQELVPHS-----KEVGRAGLLDEVIDHVQYL 201 888999**********************9.....6699999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	3.0E-9	149	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.92E-6	150	202	No hit	No description
SuperFamily	SSF47459	1.57E-9	151	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.915	152	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-4	154	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.0E-5	158	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MEGQNCVHDL QFLPMGINWI ATNASGLLGD YDASQHYIMN PGSNWIHPEP VPVPEWMHCP 60 QTPQNYVDFL AERGYTEIQK QMSYDISSQV PSSRLADPSH LEEYLRPHSE GNFIITCVQK 120 QGWTEDCSSA FQAYSSSCAA ESKYASGARR KRSREKAYAA DRCRRLRISH WLDALQELVP 180 HSKEVGRAGL LDEVIDHVQY LKYKVKDLCR SRLGGESTSN SFIFLEGHGH YLVQEQMLNG 240 PLEEIMGKFI DVYPSAATEL LQSRGLIVMP VNLVEGLCDP METLDIQEKG AVLISK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011079826.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020550205.1	0.0	transcription factor bHLH66-like isoform X2
Refseq	XP_020550207.1	0.0	transcription factor bHLH66-like isoform X4
TrEMBL	A0A0H3Y7N0	1e-113	A0A0H3Y7N0_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.D00274.1.p	1e-129	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	1e-20	LJRHL1-like 1