PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011079825.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 320aa MW: 36269.9 Da PI: 5.2228

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011079825.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.6	4e-07	178	225	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+++ +++r RR ri ++++ L+el+P++ k + a L ++++++++L XP_011079825.1 178 REKAYAADRCRRLRISHWLDALQELVPHS-----KEVGRAGLLDEVIDHVQYL 225 888999**********************9.....6699999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	3.4E-9	173	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.25E-6	174	226	No hit	No description
SuperFamily	SSF47459	1.7E-9	175	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.915	176	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-4	178	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.0E-5	182	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MDVMYERHDH GYLLSKECHS EPDDMEGQNC VHDLQFLPMG INWIATNASG LLGDYDASQH 60 YIMNPGSNWI HPEPVPVPEW MHCPQTPQNY VDFLAERGYT EIQKQMSYDI SSQVPSSRLA 120 DPSHLEEYLR PHSEGNFIIT CVQKQGWTED CSSAFQAYSS SCAAESKYAS GARRKRSREK 180 AYAADRCRRL RISHWLDALQ ELVPHSKEVG RAGLLDEVID HVQYLKYKVK DLCRSRLGGE 240 STSNSFIFLE GHGHYLVQEQ MLNGPLEEIM GKFIDVYPSA ATELLQSRGL IVMPVNLVEG 300 LCDPMETLDI QEKGAVLISK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011079825.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011079825.1	0.0	uncharacterized protein LOC105163244 isoform X1
TrEMBL	A0A0H3Y7N0	1e-112	A0A0H3Y7N0_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.D00274.1.p	1e-128	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9646	16	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	2e-20	LJRHL1-like 1