PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011079532.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family WRKY
Protein Properties Length: 293aa    MW: 32476 Da    PI: 5.0992
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011079532.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.94.9e-34137194259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s+fprsYYrCtsa+C+vkk+vers +dp++v++tYeg+H+h+
  XP_011079532.1 137 EDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSCNDPSIVVTTYEGQHTHP 194
                     8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381306.0E-972293IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.804.7E-35121196IPR003657WRKY domain
SuperFamilySSF1182901.44E-29128196IPR003657WRKY domain
PROSITE profilePS5081132.076131196IPR003657WRKY domain
SMARTSM007742.3E-39136195IPR003657WRKY domain
PfamPF031067.2E-27137194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MELLEYGEAE KSSSSLGFME LLSMQDFGPS LFDLLQGTLI PSVQLQVEPL PQDHSPELFL  60
NPPTTPNSSS ISSESTAGQN DEQTKEIVDG EEEEEEEEEE ENHKTKKLLK PKKTASQKRQ  120
REPRFAFMTK SEVDHLEDGY RWRKYGQKAV KNSPFPRSYY RCTSASCNVK KRVERSCNDP  180
SIVVTTYEGQ HTHPTPVMPR SPAAVHALPP YSAFSAPDGP SAEMVLSHPQ QHFNFSVLLN  240
CGYTHAGPTN NTVSSGGGGG QSLRFCSDQS SALLTDHGLL QDVVPWSATK KEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-28126196777Probable WRKY transcription factor 4
2lex_A7e-28126196777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011079532.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0685812e-56KJ068581.1 Sesamum indicum clone TilSSR_39782 microsatellite Sesame_39782 sequence.
GenBankKJ0737352e-56KJ073735.1 Sesamum indicum clone TilSSR_44936 microsatellite Sesame_44936 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079532.10.0probable WRKY transcription factor 23
SwissprotO229009e-59WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A2G9HDH31e-102A0A2G9HDH3_9LAMI; WRKY transcription factor
STRINGevm.model.supercontig_18.823e-80(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13092479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.15e-49WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]