PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011079260.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 309aa    MW: 35263.6 Da    PI: 8.3381
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011079260.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-174087148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
   XP_011079260.1 40 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 87
                     79******************************99************97 PP
2Myb_DNA-binding45.71.5e-1493138148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+ E+  ++++ ++lG++ W++Ia +++  Rt++++k++w+++l
   XP_011079260.1  93 RGNFTPHEEGMIIHLQALLGNK-WAAIATYLP-QRTDNDIKNYWNTHL 138
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-233190IPR009057Homeodomain-like
PROSITE profilePS5129425.0613591IPR017930Myb domain
SuperFamilySSF466892.85E-3037134IPR009057Homeodomain-like
SMARTSM007172.0E-143989IPR001005SANT/Myb domain
PfamPF002493.0E-164087IPR001005SANT/Myb domain
CDDcd001673.77E-114287No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2491143IPR009057Homeodomain-like
SMARTSM007178.4E-1392140IPR001005SANT/Myb domain
PROSITE profilePS5129419.01892142IPR017930Myb domain
PfamPF002496.6E-1393138IPR001005SANT/Myb domain
CDDcd001678.07E-995138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MLAALFLFNT FRQVSVSHPP YPMQRKMGRH PCSDKEGIKK GPWTPEEDII LVSYIQEHGP  60
GNWRAVPTNT GLLRCSKSCR LRWTNYLRPG IKRGNFTPHE EGMIIHLQAL LGNKWAAIAT  120
YLPQRTDNDI KNYWNTHLKK KLKKFQSPLD NPQMPVSDHI STVPYNNHQF MSKTYTTHHH  180
EQNSTNDEIN IKNQSSSSSG LFSRQLSHEQ NPSSSSSSYA SSAENISRLL ETWMKSSNRE  240
NGEFPTEFSE NGISRFSTDQ ELKGGFEHGE RMKMDSIPPL LFLEKWLMDE SGGQVEGDSC  300
MNVVFPSLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-24401424105MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-233814225128MYB TRANSFORMING PROTEIN
1mse_C1e-23401424105C-Myb DNA-Binding Domain
1msf_C1e-23401424105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011079260.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079260.10.0myb-related protein 306-like
SwissprotB3VTV71e-102MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A2G9GS211e-101A0A2G9GS21_9LAMI; Transcription factor, Myb superfamily
STRINGVIT_08s0056g00800.t011e-100(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.13e-85myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]