PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011078995.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 258aa MW: 29596.8 Da PI: 6.575 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 53 | 6.2e-17 | 73 | 124 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ +hn++Er RR+++N+ f++Lr+llP+ + +skKls a+++ ++ +YI +L XP_011078995.1 73 KKLNHNAVERDRRRKMNTLFSTLRSLLPSdD---QSKKLSIAATVSRVLKYIPEL 124 6789*************************66...******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.307 | 72 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.06E-14 | 73 | 129 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-14 | 73 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-16 | 73 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-14 | 73 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-11 | 78 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MLGISPQLAS LGCFMEDSNT LHHDQENPFF ISSVLSIDGD DQYLNDSPPS GKLFSNSHHG 60 EGFHHHHHHQ MVKKLNHNAV ERDRRRKMNT LFSTLRSLLP SDDQSKKLSI AATVSRVLKY 120 IPELRKEVER LDQKKETLMM MRTKICSQVS IDDDDFRTKL ARLSAVSATQ ISGEEIVVQI 180 SVPKLDKGNL ILSETLMHLE MEGFLVLTAS SFETLQGRLF CNLHLQAQES EVKDVDVWLK 240 EKILSFFQKV KKEEEEFY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011078995.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ033702 | 5e-60 | KJ033702.1 Sesamum indicum clone TilSSR_4903 microsatellite sesame_4903 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020549797.1 | 1e-167 | transcription factor ORG2-like | ||||
TrEMBL | A0A2G9HLC3 | 5e-68 | A0A2G9HLC3_9LAMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2226 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 6e-40 | bHLH family protein |