PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011078978.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family TCP
Protein Properties Length: 378aa    MW: 42124.9 Da    PI: 8.2255
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011078978.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.45e-381232723133
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceaesss 79 
                      kkdrhski T++g+RdRR+Rls+++a++fFdLqd+LGfdk+s t++WLl+++ +ai e                      +ss + +c    ++
  XP_011078978.1 123 SKKDRHSKINTARGPRDRRMRLSLDVARKFFDLQDMLGFDKASRTVDWLLKNSRAAIREKSLVcgvahanqtscshmransGSSISDDC----EV 213
                     69********************************************************9888887777766665555433322222233....22 PP

             TCP  80 ssasnsssg.....kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                     +s+sn+s +     +  +s +k+k+++k + +   +a esr kar+rarert++k r+ 
  XP_011078978.1 214 VSSSNHSTTvktteEPLPSCTKQKRTKKIKVARATVATESRRKARERARERTSQKRRLG 272
                     22222222255655556666677777777777888999*****************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-41123269IPR005333Transcription factor, TCP
PROSITE profilePS5136934.055124182IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.786251268IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MHSYNSHCNY NPIITCTDQA PSVPHRPFPD NLISSSSKSE DYPCSSSLFN FPNSPHLPLE  60
YEDVYLQFLE LFYQQQSMTS DHDATILPEP DSKENPSKEA AAGNGKASIP AVDQEVLVRK  120
RSSKKDRHSK INTARGPRDR RMRLSLDVAR KFFDLQDMLG FDKASRTVDW LLKNSRAAIR  180
EKSLVCGVAH ANQTSCSHMR ANSGSSISDD CEVVSSSNHS TTVKTTEEPL PSCTKQKRTK  240
KIKVARATVA TESRRKARER ARERTSQKRR LGESTAGPNL FAGSAISHSL QESAGSRVWI  300
NDMGAVPEDL SSDEARACVV TEEVVANTFV CRQWNPLITV SHCQDDAGLS HQQKQLADQH  360
HFCGKQPWEA YHSSYLSG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253269RRKARERARERTSQKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011078978.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078978.10.0transcription factor TCP12-like
TrEMBLA0A2G9H9M92e-62A0A2G9H9M9_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.27e-21TCP family protein