PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011078831.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 725aa    MW: 80549.3 Da    PI: 9.8226
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011078831.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.6e-092276348
                     SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg..tWktIartmg.......kgRtlkqcksrwqkyl 48
                     +W t+E++ll+ av+++G+    W++Ia+++        + +t+ +c++++++++
   XP_011078831.1 22 SWGTWEELLLAFAVNRHGTAsaAWDSIASELRkrtsdpnLSLTPHNCRLKYLDLK 76
                     6*****************99*******************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002499.6E-82276IPR001005SANT/Myb domain
SMARTSM002973.1E-8119437IPR001487Bromodomain
Gene3DG3DSA:1.20.920.104.2E-15326439IPR001487Bromodomain
SuperFamilySSF473703.66E-16328439IPR001487Bromodomain
PfamPF004398.6E-10343422IPR001487Bromodomain
PROSITE profilePS5001411.712347418IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MTKPDGIAPP TGAPKDHLSL PSWGTWEELL LAFAVNRHGT ASAAWDSIAS ELRKRTSDPN  60
LSLTPHNCRL KYLDLKRRFV APNDDFDDDE PRDDKSNVEE SVPLLEELRK LRVAELRREV  120
QRYDLNIESL ELKMKRMEEE REKSLRREKH ESDLEKMSEE KRYIEPESEP ATAREPAAGE  180
ELAKDQLSVN ESNSTDPGAE KLITGEKESE PAQTGGGELR EDRTGQTSEE PAELKSEPDQ  240
KSVREDSCNG SSNSIEESER KAKAEPVSDS ADLVESEAES DGAGAEATKE NSDVQSTASR  300
SRKEEGSDKG RRGSTNGDER EHEDQSRAVK ELSAESQPLV DFLQGIRAHK LGSTFQRRLR  360
SQESSKYHKL ILQHIDLETV ETRLKEGWYS GSKSKFFRDL LLLVNNALVF FSKNSPEANA  420
AAEIRRLISK EFSQIYAKSD SSSGKQVSLQ SLSLPKKEDL ESSHSLMLKP RISGSLIVCR  480
KRSSIAAKAS ASSSGADKKK EQTSLLAEEK EAKLQRSQPS EEPKITKKRT RDRFSSASAN  540
SKKNKNQTNS SSNKNSVVES GKQPVKGGSS SQQAEPKGEN KKNQPISDSK KRGAANFLNR  600
MKQGSSSNNG VLLDALKNTP LTSESTTSKG GSESKKNENA KRGEKKEQVT RRSSEMRQAK  660
EKEKEKEKEK EKEKEKEKGS PAKRNVGRPP KRGAAPPPTL GKRGKERAET EAAASKQPKK  720
RSRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011078831.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078831.10.0DNA ligase 1 isoform X1
TrEMBLA0A2G9FZQ10.0A0A2G9FZQ1_9LAMI; Uncharacterized protein
STRINGMigut.K00040.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.12e-61DNA-binding bromodomain-containing protein