PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011078688.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 554aa    MW: 60635 Da    PI: 7.1811
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011078688.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH573.4e-18261310255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h++ E+rRR++iN++f++Lre++P++    ++K +Ka+ L ++++YI+ Lq
  XP_011078688.1 261 RSKHSATEQRRRSKINDRFQKLREIIPNS----DQKRDKASFLLEVIDYIQFLQ 310
                     889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.6E-24256332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-18259335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.326259309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.86E-16261314No hitNo description
PfamPF000101.3E-15261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-13265315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MELPQSRPLG TEGRKATHDF LSLYSSPPAQ QDPTPSQGGY LKTHDFLQPL ERIGKNSTTT  60
KDENRGMAAV EKPPVPCPPT SVEHILPGGI GTYSISYFNQ RAQKPEGNLF TAQTSSTTRN  120
DENSNCSSYS GGGFTLWDES AIKKGKTGKE NIVAERHVLR AGVNMVGAQW MSMLEKPSQS  180
SSNNKHNTAT FSSFSSSQPS SSQKNQSFMD MITSAKNDKE EDDDEEEDEF VIKKEPSPFA  240
KGNLSVKVEA KTIDQRPNTP RSKHSATEQR RRSKINDRFQ KLREIIPNSD QKRDKASFLL  300
EVIDYIQFLQ DKVSRYENSY NAWNHDPSKM MQWRSCHIAD GFIDHTRGAN AEPAQASVFA  360
TKFDENKAGV SSSLPINGQN LVDSDIATAT TFKERSQQPE LTSKAAPVHQ PIPPNIFSFG  420
GTSIAASPVS PKQASDTDNR ITWPPSQSQQ NACTDDGNKM KDGEPTIESG TINISSVYSQ  480
GLLNTLTQAL QSSGVDLSQA CISVQIDLGK RATNIPHSKT SAAKDDHAPA SMPRSGAASA  540
GEEFSHALKR LRTS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011078688.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078688.10.0transcription factor BIM1 isoform X2
TrEMBLA0A142CD140.0A0A142CD14_9LAMI; Transcription factor BIM1
STRINGMigut.D01611.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-108bHLH family protein